R: 4.5.0
rstudio-server: 2025.05.1-513
Added Bioconductor 3.21 packages, updated R to version 4.5.0, and applied security patches.
| package | version | package | version |
|---|
| a4Base | 1.56.0 | a4Classif | 1.56.0 |
| a4Core | 1.56.0 | a4Preproc | 1.56.0 |
| a4Reporting | 1.56.0 | ABarray | 1.76.0 |
| abind | 1.4-8 | abseqR | 1.26.0 |
| ABSSeq | 1.62.0 | acde | 1.38.0 |
| ACE | 1.26.0 | aCGH | 1.86.0 |
| ACME | 2.64.0 | ada | 2.0-5 |
| adabag | 5.1 | ADAM | 1.24.0 |
| additivityTests | 1.1-4.2 | adductData | 1.24.0 |
| ade4 | 1.7-23 | ADGofTest | 0.3 |
| ADImpute | 1.18.0 | admisc | 0.38 |
| adSplit | 1.78.0 | adverSCarial | 1.6.0 |
| AffiXcan | 1.26.0 | affxparser | 1.80.0 |
| affy | 1.86.0 | affycomp | 1.84.0 |
| affyContam | 1.66.0 | affydata | 1.56.0 |
| affyILM | 1.60.0 | affyio | 1.78.0 |
| affylmGUI | 1.82.0 | affyPLM | 1.84.0 |
| AffyRNADegradation | 1.54.0 | AGDEX | 1.56.0 |
| aggregateBioVar | 1.18.0 | aggregation | 1.0.1 |
| agilp | 3.40.0 | agricolae | 1.3-7 |
| AhoCorasickTrie | 0.1.3 | AICcmodavg | 2.3-4 |
| AIMS | 1.40.0 | airway | 1.28.0 |
| akima | 0.6-3.6 | akmbiclust | 0.1.0 |
| alabama | 2023.1.0 | alabaster.base | 1.8.1 |
| alabaster.bumpy | 1.8.1 | alabaster.files | 1.6.0 |
| alabaster.mae | 1.8.0 | alabaster.matrix | 1.8.0 |
| alabaster.ranges | 1.8.0 | alabaster.sce | 1.8.0 |
| alabaster.schemas | 1.8.0 | alabaster.se | 1.8.0 |
| alabaster.spatial | 1.8.0 | alabaster.string | 1.8.0 |
| ALDEx2 | 1.40.0 | alevinQC | 1.24.0 |
| AlgDesign | 1.2.1.2 | ALL | 1.50.0 |
| alluvial | 0.1-2 | AlphaBeta | 1.22.0 |
| AlpsNMR | 4.10.0 | altcdfenvs | 2.70.0 |
| amap | 0.8-20 | AMOUNTAIN | 1.34.0 |
| amplican | 1.30.0 | analogue | 0.18.1 |
| Anaquin | 2.32.0 | ANCOMBC | 2.10.1 |
| AneuFinder | 1.34.0 | AneuFinderData | 1.36.0 |
| ANF | 1.30.0 | animalcules | 1.24.0 |
| animation | 2.8 | annaffy | 1.80.0 |
| anndata | 0.8.0 | annmap | 1.50.0 |
| annotate | 1.86.1 | AnnotationDbi | 1.70.0 |
| AnnotationFilter | 1.32.0 | AnnotationForge | 1.50.0 |
| AnnotationHub | 3.16.1 | annotationTools | 1.82.0 |
| anota | 1.56.0 | anota2seq | 1.30.0 |
| antiProfiles | 1.48.0 | AnVIL | 1.20.3 |
| AnVILBase | 1.2.0 | AnVILBilling | 1.18.0 |
| AnVILGCP | 1.2.0 | AnVILPublish | 1.18.0 |
| AnVILWorkflow | 1.8.0 | anytime | 0.3.12 |
| aod | 1.3.3 | aods3 | 0.5 |
| apcluster | 1.4.13 | apComplex | 2.74.0 |
| ape | 5.8-1 | apeglm | 1.30.0 |
| APL | 1.12.0 | aplot | 0.2.8 |
| archive | 1.1.12 | argparse | 2.2.5 |
| aricode | 1.0.3 | arm | 1.14-4 |
| aroma.affymetrix | 3.2.3 | aroma.apd | 0.7.1 |
| aroma.core | 3.3.2 | aroma.light | 3.38.0 |
| ArrayExpress | 1.68.0 | arrayhelpers | 1.1-0 |
| arrayQuality | 1.86.0 | arrayQualityMetrics | 3.64.0 |
| ARRmData | 1.44.0 | ARRmNormalization | 1.48.0 |
| arrow | 21.0.0.1 | artMS | 1.26.0 |
| arules | 1.7-11 | ASAFE | 1.34.0 |
| ASEB | 1.52.0 | ASGSCA | 1.42.0 |
| ash | 1.0-15 | ashr | 2.2-63 |
| ASICS | 2.24.0 | askpass | 1.2.1 |
| assertthat | 0.2.1 | AssessORF | 1.26.0 |
| ASSET | 2.26.0 | assorthead | 1.2.0 |
| ASURAT | 1.12.0 | atena | 1.14.1 |
| attempt | 0.3.1 | AUCell | 1.30.1 |
| autonomics | 1.16.0 | available | 1.1.0 |
| AWFisher | 1.22.0 | aws | 2.5-6 |
| aws.s3 | 0.3.22 | aws.signature | 0.6.0 |
| awsMethods | 1.1-1 | awst | 1.16.0 |
| b64 | 0.1.7 | BaalChIP | 1.34.0 |
| babelgene | 22.9 | backbone | 2.1.5 |
| backports | 1.5.0 | bacon | 1.36.0 |
| BADER | 1.46.0 | BAGS | 2.48.0 |
| bambu | 3.10.1 | bamlss | 1.2-5 |
| bamsignals | 1.40.0 | BANDITS | 1.24.0 |
| banocc | 1.32.0 | barcodetrackR | 1.16.0 |
| base64 | 2.0.2 | base64enc | 0.1-3 |
| base64url | 1.4 | basecallQC | 1.32.0 |
| baseline | 1.3-7 | BaseSpaceR | 1.52.0 |
| BASiCS | 2.20.0 | BasicSTARRseq | 1.36.0 |
| basilisk | 1.20.0 | basilisk.utils | 1.20.0 |
| batchelor | 1.24.0 | BatchJobs | 1.9 |
| batchtools | 0.9.18 | BayesKnockdown | 1.34.0 |
| bayesm | 3.1-6 | BayesSpace | 1.18.4 |
| bayestestR | 0.17.0 | bayNorm | 1.26.0 |
| baySeq | 2.42.0 | BB | 2019.10-1 |
| BBmisc | 1.13 | bbmle | 1.0.25.1 |
| bbotk | 1.6.0 | bcellViper | 1.44.0 |
| BCRANK | 1.70.0 | bcSeq | 1.30.0 |
| bdsmatrix | 1.3-7 | beachmat | 2.24.0 |
| beachmat.hdf5 | 1.6.0 | beadarray | 2.58.0 |
| BeadDataPackR | 1.60.0 | beanplot | 1.3.1 |
| BEclear | 2.24.0 | BEDASSLE | 1.6.1 |
| beer | 1.12.0 | beeswarm | 0.4.0 |
| bench | 1.1.4 | benchmarkme | 1.0.8 |
| benchmarkmeData | 1.0.4 | bestNormalize | 1.9.1 |
| betareg | 3.2-4 | bezier | 1.1.2 |
| BG2 | 1.8.0 | BgeeDB | 2.34.0 |
| BH | 1.87.0-1 | BiasedUrn | 2.0.12 |
| BiBitR | 0.3.1 | bibtex | 0.5.1 |
| BicARE | 1.66.0 | biclust | 2.0.3.1 |
| BiFET | 1.28.0 | biganalytics | 1.1.22 |
| bigassertr | 0.1.7 | BiGGR | 1.44.0 |
| biglm | 0.9-3 | bigmemory | 4.6.4 |
| bigmemory.sri | 0.1.8 | bigparallelr | 0.3.2 |
| bigrquery | 1.6.0 | bigstatsr | 1.6.2 |
| billboarder | 0.5.0 | binom | 1.1-1.1 |
| binr | 1.1.1 | bioassayR | 1.46.0 |
| Biobase | 2.68.0 | biobroom | 1.40.0 |
| biobtreeR | 1.20.0 | BioCartaImage | 1.6.0 |
| BiocBaseUtils | 1.10.0 | BiocBook | 1.6.0 |
| BiocCheck | 1.44.2 | BiocFHIR | 1.10.0 |
| BiocFileCache | 2.16.2 | BiocGenerics | 0.54.0 |
| biocGraph | 1.70.0 | BiocHubsShiny | 1.8.1 |
| BiocIO | 1.18.0 | BiocManager | 1.30.26 |
| BiocNeighbors | 2.2.0 | BioCor | 1.32.0 |
| BiocParallel | 1.42.1 | BiocPkgTools | 1.26.2 |
| BiocSet | 1.22.0 | BiocSingular | 1.24.0 |
| BiocSklearn | 1.30.0 | BiocStyle | 2.36.0 |
| biocthis | 1.18.0 | BiocVersion | 3.21.1 |
| biocViews | 1.76.0 | BiocWorkflowTools | 1.34.0 |
| biodb | 1.16.0 | biodbChebi | 1.14.0 |
| biodbHmdb | 1.14.0 | biodbNcbi | 1.12.0 |
| biodbNci | 1.12.0 | biodbUniprot | 1.14.0 |
| bioDist | 1.80.0 | biomaRt | 2.64.0 |
| biomartr | 1.0.7 | biomformat | 1.36.0 |
| BioMVCClass | 1.76.0 | BioNet | 1.68.0 |
| BioQC | 1.36.0 | biosigner | 1.36.4 |
| Biostrings | 2.76.0 | biotmle | 1.32.1 |
| BiRewire | 3.40.0 | biscuiteerData | 1.22.0 |
| BiSeq | 1.48.1 | bit | 4.6.0 |
| bit64 | 4.6.0-1 | bitops | 1.0-9 |
| biwt | 1.0.1 | bladderbatch | 1.46.0 |
| BlandAltmanLeh | 0.3.1 | blaster | 1.0.7 |
| blima | 1.42.0 | blme | 1.0-6 |
| blob | 1.2.4 | blockmodeling | 1.1.8 |
| BloodGen3Module | 1.16.0 | bluster | 1.18.0 |
| BMA | 3.18.20 | bmp | 0.3 |
| bnlearn | 5.1 | bnstruct | 1.0.15 |
| bookdown | 0.44 | BoolNet | 2.1.9 |
| bootstrap | 2019.6 | BoutrosLab.plotting.general | 7.1.2 |
| BPRMeth | 1.34.0 | BRAIN | 1.54.0 |
| bread | 0.4.1 | breakpointR | 1.26.0 |
| breakpointRdata | 1.26.0 | breastCancerVDX | 1.46.0 |
| brendaDb | 1.22.0 | brew | 1.0-10 |
| brglm | 0.7.2 | BridgeDbR | 2.18.0 |
| brio | 1.1.5 | BRISC | 1.0.6 |
| broom | 1.0.9 | broom.mixed | 0.2.9.6 |
| BrowserViz | 2.30.0 | bs4Dash | 2.3.5 |
| BSDA | 1.2.2 | BSgenome | 1.76.0 |
| BSgenome.Celegans.UCSC.ce2 | 1.4.0 | BSgenome.Drerio.UCSC.danRer7 | 1.4.0 |
| BSgenome.Ecoli.NCBI.20080805 | 1.3.1000 | BSgenome.Hsapiens.1000genomes.hs37d5 | 0.99.1 |
| BSgenome.Hsapiens.NCBI.GRCh38 | 1.3.1000 | BSgenome.Hsapiens.UCSC.hg18 | 1.3.1000 |
| BSgenome.Hsapiens.UCSC.hg19 | 1.4.3 | BSgenome.Hsapiens.UCSC.hg38 | 1.4.5 |
| BSgenome.Mmusculus.UCSC.mm10 | 1.4.3 | BSgenome.Mmusculus.UCSC.mm9 | 1.4.0 |
| BSgenomeForge | 1.8.0 | bsicons | 0.1.2 |
| bslib | 0.9.0 | bsplus | 0.1.5 |
| bsseq | 1.44.1 | BufferedMatrix | 1.72.0 |
| BufferedMatrixMethods | 1.72.0 | bugsigdbr | 1.14.3 |
| BUMHMM | 1.32.0 | bumphunter | 1.50.0 |
| BumpyMatrix | 1.16.0 | BUS | 1.64.0 |
| BUScorrect | 1.26.0 | BUSseq | 1.14.0 |
| butcher | 0.3.6 | BWStest | 0.2.3 |
| C50 | 0.2.0 | ca | 0.71.1 |
| cachem | 1.1.0 | CaDrA | 1.6.0 |
| CAEN | 1.16.0 | Cairo | 1.6-5 |
| calibrate | 1.7.7 | callr | 3.7.6 |
| calm | 1.22.0 | cancerclass | 1.52.0 |
| capushe | 1.1.2 | car | 3.1-3 |
| carData | 3.0-5 | Cardinal | 3.10.0 |
| CardinalIO | 1.6.0 | caret | 7.0-1 |
| CARNIVAL | 2.18.0 | catdata | 1.2.4 |
| Category | 2.74.0 | CatEncoders | 0.1.1 |
| caTools | 1.18.3 | CausalR | 1.40.0 |
| cba | 0.2-25 | CBEA | 1.6.0 |
| cbpManager | 1.16.0 | ccaPP | 0.3.4 |
| ccdata | 1.34.0 | ccfindR | 1.28.0 |
| ccImpute | 1.10.0 | ccmap | 1.34.0 |
| CCP | 1.2 | CCPlotR | 1.6.0 |
| ccrepe | 1.44.0 | ccTensor | 1.0.3 |
| CDFt | 1.2 | CDI | 1.6.0 |
| celaref | 1.26.0 | celda | 1.24.0 |
| celestial | 1.5.8 | CellBarcode | 1.14.0 |
| cellbaseR | 1.32.0 | CellBench | 1.24.0 |
| celldex | 1.18.0 | CelliD | 1.16.0 |
| cellity | 1.36.0 | CellMapper | 1.34.0 |
| CellMixS | 1.24.0 | CellNOptR | 1.54.0 |
| cellranger | 1.1.0 | cellscape | 1.32.0 |
| CellScore | 1.27.0 | CellTrails | 1.26.0 |
| cellxgenedp | 1.12.1 | Cepo | 1.14.0 |
| ceRNAnetsim | 1.20.0 | CFAssay | 1.42.0 |
| cfdnakit | 1.6.0 | cfToolsData | 1.6.0 |
| CGEN | 3.44.0 | CGHbase | 1.68.0 |
| CGHcall | 2.70.0 | CGHnormaliter | 1.62.0 |
| CGHregions | 1.66.0 | ChAMPdata | 2.40.0 |
| changepoint | 2.3 | changepoint.np | 1.0.5 |
| checkmate | 2.3.3 | ChemmineOB | 1.46.0 |
| ChemmineR | 3.60.0 | chemometrics | 1.4.4 |
| CHETAH | 1.24.0 | Chicago | 1.36.0 |
| chihaya | 1.8.0 | chipenrich | 2.32.0 |
| chipenrich.data | 2.32.0 | chipseq | 1.58.0 |
| ChIPseqR | 1.62.0 | ChIPsim | 1.62.0 |
| ChIPXpress | 1.52.0 | ChIPXpressData | 1.46.0 |
| chk | 0.10.0 | chopsticks | 1.74.0 |
| chromDraw | 2.38.0 | ChromHeatMap | 1.62.0 |
| chromhmmData | 0.99.2 | chromPlot | 1.36.0 |
| ChromSCape | 1.17.0 | chromstaR | 1.32.0 |
| chromstaRData | 1.34.0 | chron | 2.3-62 |
| CHRONOS | 1.36.0 | CIMICE | 1.16.0 |
| CINdex | 1.36.0 | circlize | 0.4.16 |
| circular | 0.5-1 | cisPath | 1.47.0 |
| CiteFuse | 1.20.0 | Ckmeans.1d.dp | 4.3.5 |
| classInt | 0.4-11 | cleaver | 1.46.0 |
| clevRvis | 1.8.0 | cli | 3.6.5 |
| clippda | 1.58.0 | clipr | 0.8.0 |
| clisymbols | 1.2.0 | clock | 0.7.3 |
| Clomial | 1.44.0 | clst | 1.56.0 |
| clstutils | 1.56.0 | clue | 0.3-66 |
| clustComp | 1.36.0 | clusterCrit | 1.3.0 |
| ClusterJudge | 1.30.0 | ClusterR | 1.3.3 |
| clusterSeq | 1.32.0 | ClusterSignificance | 1.36.0 |
| clusterStab | 1.80.0 | clustifyr | 1.20.0 |
| ClustIRR | 1.6.0 | clustree | 0.5.1 |
| clustvarsel | 2.3.5 | clv | 0.3-2.5 |
| clValid | 0.7 | CMA | 1.66.0 |
| cMAP | 1.15.1 | cMap2data | 1.44.0 |
| cmapR | 1.20.0 | cmdfun | 1.0.2 |
| cn.farms | 1.56.2 | cn.mops | 1.54.0 |
| CNAnorm | 1.54.0 | CNEr | 1.43.0 |
| CNORdt | 1.50.0 | CNORfeeder | 1.48.0 |
| CNORfuzzy | 1.50.0 | CNORode | 1.50.0 |
| CNTools | 1.64.0 | cnvGSA | 1.52.0 |
| CNVMetrics | 1.12.0 | CNVPanelizer | 1.40.0 |
| CNVRanger | 1.24.2 | cobs | 1.3-9-1 |
| CoCiteStats | 1.80.0 | coda | 0.19-4.1 |
| CodeDepends | 0.6.6 | codelink | 1.76.0 |
| codingMatrices | 0.4.0 | CoGAPS | 3.28.0 |
| cogena | 1.42.0 | cogeqc | 1.12.0 |
| coGPS | 1.52.0 | coin | 1.4-3 |
| cola | 2.14.0 | collapse | 2.1.3 |
| collections | 0.3.9 | colorRamps | 2.3.4 |
| colorspace | 2.1-1 | colourpicker | 1.3.0 |
| colourvalues | 0.3.9 | combi | 1.20.0 |
| combinat | 0.0-8 | common | 1.1.3 |
| commonmark | 2.0.0 | compareGroups | 4.10.0 |
| COMPASS | 1.46.0 | compcodeR | 1.44.0 |
| ComplexHeatmap | 2.24.1 | ComplexUpset | 1.3.3 |
| compositions | 2.0-9 | CompoundDb | 1.12.1 |
| CompQuadForm | 1.4.4 | ComPrAn | 1.16.0 |
| concaveman | 1.1.0 | conclust | 1.1 |
| concordexR | 1.8.0 | condformat | 0.10.1 |
| CONFESS | 1.36.0 | config | 0.3.2 |
| configr | 0.3.5 | confintr | 1.0.2 |
| conflicted | 1.2.0 | conicfit | 1.0.4 |
| consensus | 1.26.0 | ConsensusClusterPlus | 1.72.0 |
| consensusSeekeR | 1.36.0 | consICA | 2.6.0 |
| ConsRank | 2.1.5 | CONSTANd | 1.16.0 |
| contrast | 0.24.2 | convert | 1.84.0 |
| coop | 0.6-3 | copa | 1.76.0 |
| copula | 1.1-6 | coRdon | 1.26.0 |
| CoreGx | 2.12.0 | Cormotif | 1.54.0 |
| corncob | 0.4.2 | coro | 1.1.0 |
| corpcor | 1.6.10 | corral | 1.18.0 |
| corrgram | 1.14 | corrplot | 0.95 |
| coseq | 1.32.1 | cosmosR | 1.16.0 |
| COSNet | 1.42.0 | COTAN | 2.8.5 |
| countrycode | 1.6.1 | countsimQC | 1.26.0 |
| covEB | 1.34.0 | CoverageView | 1.46.0 |
| covr | 3.6.4 | cowplot | 1.2.0 |
| cplm | 0.7-12.1 | cpp11 | 0.5.2 |
| cqn | 1.54.0 | crayon | 1.5.3 |
| credentials | 2.0.2 | CRImage | 1.56.0 |
| crisprBase | 1.12.0 | crisprBowtie | 1.12.0 |
| crisprBwa | 1.12.0 | crisprScoreData | 1.12.0 |
| CRISPRseek | 1.48.0 | CrispRVariants | 1.36.0 |
| crlmm | 1.66.0 | crmn | 0.0.21 |
| crosstalk | 1.2.2 | crul | 1.6.0 |
| CSAR | 1.60.0 | csaw | 1.42.0 |
| ctc | 1.82.0 | CTDquerier | 2.16.0 |
| cTRAP | 1.26.0 | ctsGE | 1.34.0 |
| CTSV | 1.10.0 | cubature | 2.1.4 |
| Cubist | 0.5.0 | CuratedAtlasQueryR | 1.6.0 |
| curatedTCGAData | 1.30.0 | curl | 7.0.0 |
| customCMPdb | 1.18.0 | cvar | 0.5 |
| cvAUC | 1.1.4 | cvms | 1.8.1 |
| cvTools | 0.3.3 | CVXR | 1.0-15 |
| cycle | 1.62.0 | cydar | 1.32.1 |
| CytoDx | 1.28.0 | cytoKernel | 1.14.0 |
| cytolib | 2.20.0 | cytomapper | 1.20.0 |
| cytoMEM | 1.12.0 | cytometree | 2.0.6 |
| CytoML | 2.20.0 | CytoPipeline | 1.8.0 |
| CytoPipelineGUI | 1.6.0 | cytoviewer | 1.8.0 |
| dada2 | 1.36.0 | daMA | 1.80.0 |
| DART | 1.56.0 | dashboardthemes | 1.1.6 |
| data.table | 1.17.8 | data.tree | 1.2.0 |
| datamods | 1.5.3 | DataVisualizations | 1.3.5 |
| datawizard | 1.2.0 | DBI | 1.2.3 |
| dbplyr | 2.5.0 | dbscan | 1.2.3 |
| dcanr | 1.24.0 | DCATS | 1.6.0 |
| dce | 1.13.0 | dcGSA | 1.36.0 |
| ddCt | 1.64.0 | DDRTree | 0.1.5 |
| dearseq | 1.20.0 | debCAM | 1.26.0 |
| DECIPHER | 3.4.0 | DeconRNASeq | 1.50.0 |
| decontam | 1.28.0 | decoupleR | 2.14.0 |
| DEFormats | 1.36.0 | DEGraph | 1.60.0 |
| DEGreport | 1.44.0 | DEGseq | 1.62.0 |
| Delaporte | 8.4.2 | DelayedArray | 0.34.1 |
| DelayedDataFrame | 1.24.0 | DelayedMatrixStats | 1.30.0 |
| DelayedRandomArray | 1.16.0 | DelayedTensor | 1.14.0 |
| deldir | 2.0-4 | DELocal | 1.8.0 |
| deltaCaptureC | 1.22.0 | deltaGseg | 1.48.0 |
| DeMAND | 1.38.0 | demuxmix | 1.10.0 |
| dendextend | 1.19.1 | densEstBayes | 1.0-2.2 |
| densvis | 1.18.0 | DEoptimR | 1.1-4 |
| DepecheR | 1.24.0 | DepInfeR | 1.12.0 |
| depmap | 1.22.0 | depmixS4 | 1.5-1 |
| DEqMS | 1.26.0 | derfinderHelper | 1.42.0 |
| Deriv | 4.2.0 | desc | 1.4.3 |
| DescTools | 0.99.60 | DESeq2 | 1.48.2 |
| DEsingle | 1.28.0 | deSolve | 1.40 |
| DEsubs | 1.34.0 | detectseparation | 0.3 |
| devtools | 2.4.5 | DEWSeq | 1.22.0 |
| DExMAdata | 1.16.0 | DEXSeq | 1.54.1 |
| DFP | 1.66.0 | dgof | 1.5.1 |
| diagram | 1.6.5 | DiagrammeR | 1.0.11 |
| diceR | 3.1.0 | dichromat | 2.0-0.1 |
| diffcoexp | 1.28.0 | DiffCorr | 0.4.5 |
| DifferentialRegulation | 2.6.0 | diffGeneAnalysis | 1.90.0 |
| diffHic | 1.40.0 | DiffLogo | 2.32.0 |
| diffobj | 0.3.6 | diffuStats | 1.28.0 |
| digest | 0.6.37 | diggit | 1.40.0 |
| diptest | 0.77-2 | dir.expiry | 1.16.0 |
| directlabels | 2025.6.24 | Director | 1.34.0 |
| directPA | 1.5.1 | DirichletMultinomial | 1.50.0 |
| DirichletReg | 0.7-2 | dirmult | 0.1.3-5 |
| discordant | 1.32.0 | DiscoRhythm | 1.24.0 |
| distances | 0.1.12 | distillery | 1.2-2 |
| distinct | 1.20.0 | distr | 2.9.7 |
| distributional | 0.5.0 | distributions3 | 0.2.2 |
| dittoSeq | 1.20.0 | divergence | 1.24.0 |
| dixonTest | 1.0.4 | dks | 1.54.0 |
| DMCFB | 1.22.1 | DMCHMM | 1.30.1 |
| dml | 1.1.0 | DMRcaller | 1.40.0 |
| DMRScan | 1.30.0 | DMwR2 | 0.0.2 |
| DNABarcodeCompatibility | 1.24.0 | DNABarcodes | 1.38.0 |
| DNAcopy | 1.82.0 | DNAshapeR | 1.36.0 |
| dnet | 1.1.7 | doBy | 4.7.0 |
| docopt | 0.7.2 | doFuture | 1.1.2 |
| doMC | 1.3.8 | doParallel | 1.0.17 |
| doRNG | 1.8.6.2 | dorothea | 1.20.0 |
| DOSE | 4.2.0 | doseR | 1.24.0 |
| doSNOW | 1.0.20 | dotCall64 | 1.2 |
| downlit | 0.4.4 | downloader | 0.4.1 |
| downloadthis | 0.5.0 | dplyr | 1.1.4 |
| dqrng | 0.4.1 | drawer | 0.2.0.1 |
| drawProteins | 1.28.0 | DrImpute | 1.0 |
| DRIMSeq | 1.36.0 | DriverNet | 1.48.0 |
| DropletUtils | 1.28.1 | drtmle | 1.1.2 |
| DrugVsDisease | 2.50.0 | DrugVsDiseasedata | 1.44.0 |
| dStruct | 1.14.0 | DT | 0.34.0 |
| DTA | 2.54.0 | dtangle | 2.0.9 |
| dtplyr | 1.3.1 | dtt | 0.1-2.1 |
| dtw | 1.23-1 | duckdb | 1.3.2 |
| Dune | 1.20.0 | dunn.test | 1.3.6 |
| dupRadar | 1.38.0 | dyebias | 1.68.0 |
| dynamicTreeCut | 1.63-1 | DynDoc | 1.86.0 |
| e1071 | 1.7-16 | earth | 5.3.4 |
| easierData | 1.14.0 | easylift | 1.6.0 |
| easyPubMed | 3.1.6 | easyreporting | 1.20.0 |
| easyRNASeq | 2.44.0 | EBarrays | 2.72.0 |
| EBcoexpress | 1.52.0 | EBImage | 4.50.0 |
| EBSEA | 1.36.0 | EBSeq | 2.6.0 |
| echarts4r | 0.4.5 | ecolitk | 1.80.0 |
| ECOSolveR | 0.5.5 | ecp | 3.1.6 |
| Ecume | 0.9.2 | EDASeq | 2.42.0 |
| edgeR | 4.6.3 | EDIRquery | 1.8.0 |
| eds | 1.10.0 | effsize | 0.8.1 |
| EGAD | 1.36.0 | egg | 0.4.5 |
| EGSEAdata | 1.36.0 | einsum | 0.1.2 |
| eiR | 1.48.0 | eisaR | 1.20.0 |
| elasticnet | 1.3 | elitism | 1.1.1 |
| ellipse | 0.5.0 | ellipsis | 0.3.2 |
| ELMER.data | 2.32.0 | emdbook | 1.3.14 |
| emdist | 0.3-3 | EMDomics | 2.38.0 |
| emmeans | 1.11.2-8 | EmpiricalBrownsMethod | 1.36.0 |
| energy | 1.7-12 | english | 1.2-6 |
| EnhancedVolcano | 1.26.0 | EnMCB | 1.20.0 |
| EnrichedHeatmap | 1.38.0 | EnrichmentBrowser | 2.38.1 |
| enrichR | 3.4 | ensembldb | 2.32.0 |
| entropy | 1.3.2 | enviPat | 2.6 |
| EnvStats | 3.1.0 | epialleleR | 1.16.0 |
| EpiDISH | 2.24.0 | epigenomix | 1.48.1 |
| EpiMix.data | 1.10.0 | epimutacionsData | 1.12.0 |
| epiNEM | 1.32.0 | epiR | 2.0.86 |
| epistack | 1.14.0 | epistasisGA | 1.10.0 |
| epivizrServer | 1.36.0 | erccdashboard | 1.42.0 |
| ERSSA | 1.26.0 | escheR | 1.8.0 |
| esetVis | 1.34.0 | estimability | 1.5.1 |
| etrunct | 0.1 | eudysbiome | 1.38.0 |
| eulerr | 7.0.2 | eva | 0.2.6 |
| evaluate | 1.0.5 | evaluomeR | 1.24.0 |
| evd | 2.3-7.1 | evmix | 2.12 |
| ewceData | 1.16.0 | Exact | 3.3 |
| exactRankTests | 0.8-35 | excelR | 0.4.0 |
| ExCluster | 1.26.0 | ExiMiR | 2.50.0 |
| ExperimentHub | 2.16.1 | ExperimentSubset | 1.18.1 |
| ExploreModelMatrix | 1.20.0 | expm | 1.0-0 |
| ExpressionAtlas | 2.0.0 | ExtDist | 0.7-3 |
| extraDistr | 1.10.0 | extrafont | 0.19 |
| extrafontdb | 1.0 | extRemes | 2.2-1 |
| EZtune | 3.1.1 | fabia | 2.54.0 |
| fabricatr | 1.0.2 | factDesign | 1.84.0 |
| FamAgg | 1.36.0 | fANCOVA | 0.6-1 |
| fansi | 1.0.6 | farver | 2.1.2 |
| fastcluster | 1.3.0 | fastDummies | 1.7.5 |
| fastICA | 1.2-7 | fastmap | 1.2.0 |
| fastmatch | 1.1-6 | FastqCleaner | 1.26.0 |
| fastreeR | 1.12.5 | fastseg | 1.54.0 |
| fauxpas | 0.5.2 | fBasics | 4041.97 |
| fCI | 1.38.0 | FCPS | 1.3.4 |
| fda | 6.3.0 | fdrame | 1.80.0 |
| fdrtool | 1.2.18 | fds | 1.8 |
| FEAST | 1.16.0 | FeatSeekR | 1.8.0 |
| feature | 1.2.15 | fedup | 1.16.0 |
| FELLA | 1.28.0 | fenr | 1.6.1 |
| ff | 4.5.2 | fftw | 1.0-9 |
| fftwtools | 0.9-11 | fGarch | 4033.92 |
| fgga | 1.16.0 | FGNet | 3.42.0 |
| fgsea | 1.34.2 | fields | 16.3.1 |
| filelock | 1.0.3 | filematrix | 1.3 |
| fillpattern | 1.0.2 | FilterFFPE | 1.18.0 |
| findpython | 1.0.9 | fingerprint | 3.5.7 |
| FIs | 1.36.0 | FISHalyseR | 1.42.0 |
| fishpond | 2.14.0 | fission | 1.28.0 |
| fit.models | 0.64 | fitdistrplus | 1.2-4 |
| FitHiC | 1.34.0 | flashClust | 1.01-2 |
| flatxml | 0.1.1 | flexclust | 1.5.0 |
| flexdashboard | 0.6.2 | flexmix | 2.3-20 |
| FlexParamCurve | 1.5-7 | flextable | 0.9.10 |
| float | 0.3-3 | flock | 0.7 |
| flowAI | 1.38.0 | flowBeads | 1.46.0 |
| flowBin | 1.44.0 | flowcatchR | 1.42.0 |
| flowCHIC | 1.42.0 | flowClean | 1.46.0 |
| flowClust | 3.46.0 | flowCore | 2.20.0 |
| flowCyBar | 1.44.0 | flowFP | 1.66.0 |
| flowGate | 1.8.0 | flowGraph | 1.16.0 |
| flowMatch | 1.44.0 | flowMeans | 1.68.0 |
| flowMerge | 2.56.0 | flowPeaks | 1.54.0 |
| flowPlots | 1.56.0 | flowSpecs | 1.22.0 |
| flowStats | 4.20.0 | flowTime | 1.32.0 |
| flowTrans | 1.60.0 | flowViz | 1.72.0 |
| flowVS | 1.40.0 | flowWorkspace | 4.20.0 |
| fmcsR | 1.50.0 | FME | 1.3.6.4 |
| fmrs | 1.18.0 | fmsb | 0.7.6 |
| FMStable | 0.1-4 | FNN | 1.1.4.1 |
| fobitools | 1.16.0 | fontawesome | 0.5.3 |
| fontBitstreamVera | 0.1.1 | fontLiberation | 0.1.0 |
| fontquiver | 0.2.1 | forcats | 1.0.0 |
| foreach | 1.5.2 | forecast | 8.24.0 |
| forestplot | 3.1.7 | formatR | 1.14 |
| formattable | 0.2.1 | Formula | 1.2-5 |
| formula.tools | 1.7.1 | fpc | 2.2-13 |
| fracdiff | 1.5-3 | fractional | 0.1.3 |
| fresh | 0.2.2 | FRGEpistasis | 1.44.0 |
| frma | 1.60.0 | frmaTools | 1.60.0 |
| fs | 1.6.6 | FSelector | 0.34 |
| fst | 0.9.8 | fstcore | 0.10.0 |
| furrr | 0.3.1 | futile.logger | 1.4.3 |
| futile.options | 1.0.1 | future | 1.67.0 |
| future.apply | 1.20.0 | fuzzyjoin | 0.1.6.1 |
| GA | 3.2.4 | gaga | 2.54.0 |
| gage | 2.58.0 | gam | 1.22-6 |
| gamlss | 5.5-0 | gamlss.data | 6.0-7 |
| gamlss.dist | 6.1-1 | gap | 1.6 |
| gap.datasets | 0.0.6 | GAprediction | 1.34.0 |
| garfield | 1.36.0 | gargle | 1.6.0 |
| GateFinder | 1.28.0 | gatom | 1.6.0 |
| gbm | 2.2.2 | GBScleanR | 2.2.0 |
| gbutils | 0.5 | gcatest | 2.8.0 |
| gclus | 1.3.3 | gCrisprTools | 2.14.0 |
| gcrma | 2.80.0 | gcspikelite | 1.46.0 |
| gdata | 3.0.1 | gDRstyle | 1.6.0 |
| GDSArray | 1.28.0 | gdsfmt | 1.44.1 |
| gdtools | 0.4.3 | geeM | 0.10.1 |
| geepack | 1.3.12 | geigen | 2.3 |
| GEM | 1.34.0 | gemini | 1.22.0 |
| gemma.R | 3.4.5 | genalg | 0.2.1 |
| genArise | 1.84.0 | GeneBreak | 1.38.0 |
| geneClassifiers | 1.32.0 | GeneExpressionSignature | 1.54.0 |
| genefilter | 1.90.0 | GeneGA | 1.58.0 |
| GeneMeta | 1.80.0 | GeneNet | 1.2.17 |
| GeneNetworkBuilder | 1.50.0 | GeneOverlap | 1.44.0 |
| geneplast | 1.34.0 | geneplotter | 1.86.0 |
| geneRecommender | 1.80.0 | GeneRegionScan | 1.64.0 |
| generics | 0.1.4 | geneRxCluster | 1.44.0 |
| GeneSelectMMD | 2.52.0 | geNetClassifier | 1.48.0 |
| genetics | 1.3.8.1.3 | GeneticsPed | 1.70.0 |
| geneXtendeR | 1.34.0 | GENIE3 | 1.30.0 |
| genieclust | 1.2.0 | genlasso | 1.6.1 |
| GENLIB | 1.1.10 | genoCN | 1.58.0 |
| genomation | 1.40.1 | GenomAutomorphism | 1.10.0 |
| GenomeInfoDb | 1.44.2 | GenomeInfoDbData | 1.2.14 |
| genomeIntervals | 1.64.0 | genomes | 3.38.0 |
| GenomicAlignments | 1.44.0 | GenomicDataCommons | 1.32.1 |
| GenomicDistributions | 1.16.1 | GenomicFeatures | 1.60.0 |
| GenomicFiles | 1.44.1 | genomicInstability | 1.14.0 |
| GenomicRanges | 1.60.0 | GenomicScores | 2.20.2 |
| GenomicTools.fileHandler | 0.1.5.9 | GenomicTuples | 1.42.0 |
| GenSA | 1.1.14.1 | GeoDiff | 1.14.0 |
| GEOfastq | 1.16.0 | GEOmetadb | 1.70.0 |
| geometries | 0.2.4 | geometry | 0.5.2 |
| GeomxTools | 3.12.0 | GEOquery | 2.76.0 |
| geosphere | 1.5-20 | GEOsubmission | 1.60.0 |
| GeoTcgaData | 2.8.0 | gert | 2.1.5 |
| getDEE2 | 1.18.0 | getopt | 1.20.4 |
| GetoptLong | 1.0.5 | geva | 1.16.0 |
| GFA | 1.0.5 | gg4way | 1.6.1 |
| ggalluvial | 0.12.5 | GGally | 2.4.0 |
| ggalt | 0.4.0 | gganimate | 1.0.11 |
| ggbeeswarm | 0.7.2 | ggbump | 0.1.0 |
| ggcorrplot | 0.1.4.1 | ggcyto | 1.36.0 |
| ggdendro | 0.2.0 | ggdist | 3.3.3 |
| ggExtra | 0.11.0 | ggfittext | 0.10.2 |
| ggforce | 0.5.0 | ggformula | 0.12.2 |
| ggfortify | 0.4.19 | ggfun | 0.2.0 |
| gggenes | 0.5.1 | ggh4x | 0.3.1 |
| gghalves | 0.1.4 | ggimage | 0.3.4 |
| ggiraph | 0.9.0 | ggkegg | 1.6.0 |
| ggm | 2.5.2 | ggmanh | 1.12.0 |
| ggmcmc | 1.5.1.1 | ggmsa | 1.14.1 |
| ggnetwork | 0.5.13 | ggnewscale | 0.5.2 |
| GGPA | 1.20.0 | ggplot.multistats | 1.0.1 |
| ggplot2 | 3.5.2 | ggplotify | 0.1.2 |
| ggpmisc | 0.6.2 | ggpointdensity | 0.2.0 |
| ggpp | 0.5.9 | ggprism | 1.0.7 |
| ggraph | 2.2.2 | ggrastr | 1.0.2 |
| ggrepel | 0.9.6 | ggridges | 0.5.7 |
| ggsc | 1.6.1 | ggsci | 3.2.0 |
| ggseqlogo | 0.2 | ggside | 0.3.2 |
| ggsignif | 0.6.4 | ggspavis | 1.14.3 |
| ggstar | 1.0.4 | ggstats | 0.10.0 |
| ggtangle | 0.0.7 | ggtext | 0.1.2 |
| ggthemes | 5.1.0 | ggtree | 3.16.3 |
| ggtreeDendro | 1.10.0 | ggtreeExtra | 1.18.0 |
| ggupset | 0.4.1 | ggvenn | 0.1.10 |
| ggvis | 0.4.9 | ggwordcloud | 0.6.2 |
| gh | 1.5.0 | GIGSEA | 1.26.0 |
| girafe | 1.60.0 | gistr | 0.9.0 |
| git2r | 0.36.2 | gitcreds | 0.1.2 |
| GLAD | 2.72.0 | GladiaTOX | 1.24.1 |
| glasso | 1.11 | gld | 2.6.7 |
| Glimma | 2.18.0 | glm2 | 1.2.1 |
| glmGamPoi | 1.20.0 | glmmTMB | 1.1.12 |
| glmnet | 4.1-10 | glmpca | 0.2.0 |
| GlobalAncova | 4.26.0 | GlobalOptions | 0.1.2 |
| globals | 0.18.0 | globalSeq | 1.36.0 |
| globaltest | 5.62.0 | GloScope | 1.6.0 |
| glue | 1.8.0 | gmm | 1.9-1 |
| gmodels | 2.19.1 | gmp | 0.7-5 |
| GMRP | 1.36.0 | GNET2 | 1.24.0 |
| gnm | 1.1-5 | GO.db | 3.21.0 |
| GOexpress | 1.42.0 | GoFKernel | 2.1-3 |
| goftest | 1.2-3 | GOfuncR | 1.28.0 |
| golem | 0.5.1 | googleAuthR | 2.0.2 |
| googledrive | 2.1.1 | googlesheets4 | 1.1.2 |
| googleVis | 0.7.3 | GOpro | 1.34.0 |
| goProfiles | 1.70.0 | GOSemSim | 2.34.0 |
| goSTAG | 1.32.0 | GOTHiC | 1.44.0 |
| goTools | 1.82.0 | gower | 1.0.2 |
| GPA | 1.20.0 | GPArotation | 2025.3-1 |
| gplots | 3.2.0 | gpls | 1.80.0 |
| gprofiler2 | 0.2.3 | gpuMagic | 1.23.0 |
| gRain | 1.4.5 | granulator | 1.16.0 |
| graph | 1.86.0 | GraphAlignment | 1.72.0 |
| GraphAT | 1.80.0 | graphite | 1.54.0 |
| graphlayouts | 1.2.2 | gRbase | 2.0.3 |
| GRENITS | 1.60.0 | GreyListChIP | 1.40.0 |
| gridBase | 0.4-7 | gridExtra | 2.3 |
| gridGraphics | 0.5-1 | gridSVG | 1.7-6 |
| gridtext | 0.1.5 | grImport | 0.9-7 |
| groHMM | 1.42.0 | groupdata2 | 2.0.5 |
| grr | 0.9.5 | GSA | 1.03.3 |
| GSALightning | 1.36.0 | GSAR | 1.42.0 |
| GSCA | 2.38.0 | gscreend | 1.22.0 |
| GSEABase | 1.70.0 | GSEAlm | 1.68.0 |
| GSEAmining | 1.18.0 | GSgalgoR | 1.18.0 |
| gsignal | 0.3-7 | gsl | 2.1-8 |
| gsmoothr | 0.1.7 | gson | 0.1.0 |
| gss | 2.2-9 | gstat | 2.1-4 |
| gsubfn | 0.7 | GSVA | 2.2.0 |
| GSVAdata | 1.44.0 | gtable | 0.3.6 |
| gtools | 3.9.5 | gtrellis | 1.40.0 |
| Guitar | 2.24.0 | GUniFrac | 1.9 |
| GWAS.BAYES | 1.18.0 | GWASExactHW | 1.2 |
| GWASTools | 1.54.0 | GWENA | 1.18.0 |
| gypsum | 1.4.0 | h5mread | 1.0.1 |
| h5vc | 2.42.0 | h5vcData | 2.28.0 |
| hapFabia | 1.50.0 | hardhat | 1.4.2 |
| HardyWeinberg | 1.7.8 | Harman | 1.36.0 |
| harmonicmeanp | 3.0.1 | harmony | 1.2.3 |
| Harshlight | 1.79.0 | hash | 2.2.6.3 |
| haven | 2.5.5 | hca | 1.16.0 |
| HDCI | 1.0-2 | HDF5Array | 1.36.0 |
| hdf5r | 1.3.12 | HDInterval | 0.2.4 |
| hdrcde | 3.4 | HDTD | 1.42.0 |
| heatmap3 | 1.1.9 | heatmaply | 1.6.0 |
| heatmaps | 1.32.0 | Heatplus | 3.16.0 |
| HELP | 1.66.0 | HEM | 1.80.0 |
| here | 1.0.1 | hermes | 1.12.1 |
| HERON | 1.6.1 | Herper | 1.18.0 |
| hexbin | 1.28.5 | HGC | 1.16.0 |
| HGNChelper | 0.8.15 | hgu133a.db | 3.13.0 |
| hgu133a2.db | 3.13.0 | hgu133plus2.db | 3.13.0 |
| hgu95a.db | 3.13.0 | hgu95av2.db | 3.13.0 |
| hiAnnotator | 1.42.0 | HIBAG | 1.44.0 |
| HiCBricks | 1.26.0 | HiCcompare | 1.30.0 |
| HiCDOC | 1.10.2 | HiCExperiment | 1.8.0 |
| HiContacts | 1.10.0 | HiCool | 1.8.0 |
| hicVennDiagram | 1.6.0 | HiddenMarkov | 1.8-14 |
| hierGWAS | 1.38.0 | hierinf | 1.26.0 |
| highcharter | 0.9.4 | highr | 0.11 |
| HilbertCurve | 2.2.0 | HilbertVis | 1.66.1 |
| HilbertVisGUI | 1.66.1 | HIPPO | 1.20.0 |
| HIREewas | 1.26.0 | HiTC | 1.52.0 |
| HiveR | 0.4.0 | hmdbQuery | 1.28.0 |
| Hmisc | 5.2-3 | HMMcopy | 1.50.0 |
| hms | 1.1.3 | homologene | 1.4.68.19.3.27 |
| hoodscanR | 1.6.0 | hopach | 2.68.0 |
| HPAanalyze | 1.26.1 | hpar | 1.50.0 |
| HPiP | 1.14.0 | hrbrthemes | 0.8.7 |
| HSMMSingleCell | 1.28.0 | htm2txt | 2.2.2 |
| htmlTable | 2.4.3 | htmltools | 0.5.8.1 |
| HTMLUtils | 0.1.9 | htmlwidgets | 1.6.4 |
| HTqPCR | 1.62.0 | HTSCluster | 2.0.11 |
| HTSFilter | 1.48.0 | httpcache | 1.2.0 |
| httpcode | 0.3.0 | httpuv | 1.6.16 |
| httr | 1.4.7 | httr2 | 1.2.1 |
| HubPub | 1.16.0 | huge | 1.3.5 |
| hummingbird | 1.18.0 | hunspell | 3.0.6 |
| hwriter | 1.3.2.1 | HybridMTest | 1.52.0 |
| hyperdraw | 1.60.0 | hypergraph | 1.80.0 |
| iASeq | 1.52.0 | iasva | 1.26.0 |
| iBBiG | 1.52.0 | ibh | 1.56.0 |
| iBMQ | 1.48.0 | ica | 1.0-3 |
| iCARE | 1.36.0 | Icens | 1.80.0 |
| iChip | 1.62.0 | iClusterPlus | 1.44.0 |
| iCOBRA | 1.36.0 | ICS | 1.4-2 |
| ICSNP | 1.1-2 | IdeoViz | 1.44.0 |
| idiogram | 1.84.0 | IDPmisc | 1.1.21 |
| idpr | 1.18.0 | idr | 1.3 |
| idr2d | 1.22.0 | ids | 1.0.1 |
| IFAA | 1.10.0 | iGC | 1.38.0 |
| IgGeneUsage | 1.22.0 | igraph | 2.1.4 |
| IHW | 1.36.0 | Illumina450ProbeVariants.db | 1.44.0 |
| illuminaio | 0.50.0 | ILoReg | 1.18.0 |
| imager | 1.0.5 | imcRtools | 1.14.0 |
| IMMAN | 1.28.0 | immunoClust | 1.40.0 |
| immunotation | 1.16.2 | IMPCdata | 1.44.0 |
| import | 1.3.2 | impute | 1.82.0 |
| imputeLCMD | 2.1 | inaparc | 1.2.0 |
| INDEED | 2.22.0 | ineq | 0.2-13 |
| iNEXT | 3.0.2 | infercnv | 1.24.0 |
| infinityFlow | 1.18.0 | Informeasure | 1.18.0 |
| infotheo | 1.2.0.1 | ini | 0.3.1 |
| inline | 0.3.21 | INPower | 1.44.0 |
| insight | 1.4.2 | instantiate | 0.2.3 |
| INTACT | 1.8.0 | interacCircos | 1.18.0 |
| InteractionSet | 1.36.1 | InteractiveComplexHeatmap | 1.16.0 |
| interactiveDisplayBase | 1.46.0 | intergraph | 2.0-4 |
| interp | 1.1-6 | intervals | 0.15.5 |
| IntramiRExploreR | 1.30.0 | intrinsicDimension | 1.2.0 |
| inum | 1.0-5 | InvariantCausalPrediction | 0.8 |
| invgamma | 1.2 | IONiseR | 2.32.0 |
| ipdDb | 1.26.0 | ipred | 0.9-15 |
| IRanges | 2.42.0 | IRdisplay | 1.1 |
| IRkernel | 1.3.2 | irlba | 2.3.5.1 |
| irr | 0.84.1 | isa2 | 0.3.6 |
| ISAnalytics | 1.18.0 | iSEE | 2.20.0 |
| iSEEde | 1.6.0 | iSEEhex | 1.10.0 |
| iSEEhub | 1.10.0 | iSEEindex | 1.6.0 |
| iSEEpathways | 1.6.0 | iSEEu | 1.20.0 |
| iSeq | 1.60.0 | ISLET | 1.10.0 |
| isoband | 0.2.7 | isobar | 1.54.0 |
| IsoBayes | 1.6.1 | ISOcodes | 2025.05.18 |
| IsoCorrectoR | 1.26.0 | IsoCorrectoRGUI | 1.24.0 |
| ISoLDE | 1.36.0 | isomiRs | 1.36.1 |
| isotree | 0.6.1-4 | isva | 1.9 |
| ITALICS | 2.68.0 | ITALICSData | 2.46.0 |
| iterativeBMA | 1.66.0 | iterativeBMAsurv | 1.66.0 |
| iterators | 1.0.14 | itertools | 0.1-3 |
| IVAS | 2.28.0 | IWTomics | 1.32.0 |
| JADE | 2.0-4 | janeaustenr | 1.0.0 |
| janitor | 2.2.1 | JASPAR2018 | 1.1.1 |
| JASPAR2024 | 0.99.7 | jomo | 2.7-6 |
| jpeg | 0.1-11 | jquerylib | 0.1.4 |
| jsonlite | 2.0.0 | jsonvalidate | 1.5.0 |
| kableExtra | 1.4.0 | KBoost | 1.16.0 |
| KCsmart | 2.66.0 | kde1d | 1.1.1 |
| kebabs | 1.42.0 | KEGGandMetacoreDzPathwaysGEO | 1.28.0 |
| KEGGdzPathwaysGEO | 1.46.0 | KEGGgraph | 1.68.0 |
| keggorthology | 2.60.0 | KEGGREST | 1.48.1 |
| Kendall | 2.2.1 | keras | 2.16.0 |
| KernelKnn | 1.1.5 | kernlab | 0.9-33 |
| kinship2 | 1.9.6.2 | KinSwingR | 1.26.0 |
| klaR | 1.7-3 | km.ci | 0.5-6 |
| kmer | 1.1.2 | KMsurv | 0.1-6 |
| knitr | 1.50 | knitrBootstrap | 1.0.3 |
| knn.covertree | 1.0 | knnmi | 1.0 |
| KOdata | 1.34.0 | kohonen | 3.0.12 |
| koRpus | 0.13-8 | koRpus.lang.en | 0.1-4 |
| kpeaks | 1.1.0 | kriging | 1.2 |
| ks | 1.15.1 | kSamples | 1.2-12 |
| labeling | 0.4.3 | labelled | 2.14.1 |
| LACE | 2.12.0 | laeken | 0.5.3 |
| lambda.r | 1.2.4 | LambertW | 0.6.9-2 |
| lamW | 2.2.5 | LaplacesDemon | 16.1.6 |
| lapmix | 1.72.0 | lars | 1.3 |
| later | 1.4.4 | latex2exp | 0.9.6 |
| latticeExtra | 0.6-30 | lava | 1.8.1 |
| lavaan | 0.6-19 | lazyeval | 0.2.2 |
| LBE | 1.76.0 | lbfgs | 1.2.1.2 |
| ldblock | 1.38.0 | LEA | 3.20.0 |
| leaps | 3.2 | LearnBayes | 2.15.1 |
| learnr | 0.11.5 | LedPred | 1.42.0 |
| lefser | 1.18.0 | leidenbase | 0.1.35 |
| lemur | 1.6.1 | les | 1.58.0 |
| levi | 1.26.0 | lexicon | 1.2.1 |
| lfa | 2.8.0 | lfda | 1.1.3 |
| lgr | 0.5.0 | lhs | 1.2.0 |
| libcoin | 1.0-10 | LiblineaR | 2.10-24 |
| lifecycle | 1.0.4 | LIM | 1.4.7.2 |
| limma | 3.64.3 | limmaGUI | 1.84.0 |
| limSolve | 2.0.1 | linkcomm | 1.0-14 |
| Linnorm | 2.32.0 | linprog | 0.9-4 |
| LinTInd | 1.12.0 | lintr | 3.2.0 |
| lionessR | 1.22.0 | lipidr | 2.22.1 |
| LiquidAssociation | 1.62.0 | listenv | 0.9.1 |
| listviewer | 4.0.0 | litedown | 0.7 |
| lmdme | 1.50.0 | lme4 | 1.1-37 |
| lmerTest | 3.1-3 | lmodel2 | 1.7-4 |
| lmom | 3.2 | Lmoments | 1.3-1 |
| lmtest | 0.9-40 | lobstr | 1.1.2 |
| locfdr | 1.1-8 | locfit | 1.5-9.12 |
| loci2path | 1.28.0 | log4r | 0.4.4 |
| logger | 0.4.0 | logging | 0.10-108 |
| logicFS | 2.28.0 | LogicReg | 1.6.6 |
| logistf | 1.26.1 | logitnorm | 0.8.39 |
| logNormReg | 0.5-0 | logr | 1.3.9 |
| lokern | 1.1-12 | LOLA | 1.38.0 |
| longitudinal | 1.1.13 | loo | 2.8.0 |
| LoomExperiment | 1.26.1 | LPE | 1.82.0 |
| lpNet | 2.40.0 | lpSolve | 5.6.23 |
| lpSolveAPI | 5.5.2.0-17.14 | lpsymphony | 1.36.0 |
| LRBaseDbi | 2.18.1 | LRcell | 1.16.0 |
| lsa | 0.73.3 | LSD | 4.1-0 |
| lsr | 0.5.2 | lubridate | 1.9.4 |
| lumiHumanAll.db | 1.22.0 | LungCancerACvsSCCGEO | 1.44.0 |
| lwgeom | 0.2-14 | LymphoSeq | 1.36.0 |
| LymphoSeqDB | 0.99.2 | M3C | 1.30.0 |
| M3Drop | 1.34.0 | maCorrPlot | 1.78.0 |
| MACSQuantifyR | 1.22.0 | MACSr | 1.16.0 |
| made4 | 1.82.0 | MafDb.1Kgenomes.phase3.hs37d5 | 3.10.0 |
| MafDb.ExAC.r1.0.hs37d5 | 3.10.0 | MafDb.gnomADex.r2.1.hs37d5 | 3.10.0 |
| maftools | 2.24.0 | magic | 1.6-1 |
| magicaxis | 2.5.1 | magick | 2.8.7 |
| magrene | 1.10.0 | magrittr | 2.0.3 |
| MAI | 1.14.0 | makecdfenv | 1.84.0 |
| MALDIquant | 1.22.3 | MANOR | 1.80.0 |
| MantelCorr | 1.78.0 | mapplots | 1.5.3 |
| mapproj | 1.2.12 | maps | 3.4.3 |
| mapscape | 1.32.0 | maptree | 1.4-9 |
| markdown | 2.0 | marr | 1.18.0 |
| marray | 1.86.0 | martini | 1.28.0 |
| mashr | 0.2.79 | maSigPro | 1.80.0 |
| maskBAD | 1.52.0 | MassArray | 1.60.0 |
| massiR | 1.44.0 | MassSpecWavelet | 1.74.0 |
| MAST | 1.33.0 | matchBox | 1.50.0 |
| matchingR | 1.3.3 | mathjaxr | 1.8-0 |
| matlab | 1.0.4.1 | matrixcalc | 1.0-6 |
| MatrixCorrelation | 0.10.1 | MatrixEQTL | 2.3 |
| MatrixExtra | 0.1.15 | MatrixGenerics | 1.20.0 |
| MatrixModels | 0.5-4 | matrixStats | 1.5.0 |
| matrixTests | 0.2.3 | matter | 2.10.0 |
| maxLik | 1.5-2.1 | maxstat | 0.7-26 |
| MBA | 0.1-2 | MBAmethyl | 1.42.0 |
| MBASED | 1.42.0 | MBCB | 1.62.0 |
| mbest | 0.6.1 | mbkmeans | 1.24.0 |
| mboost | 2.9-11 | MBQN | 2.20.0 |
| mbQTL | 1.8.0 | MBttest | 1.36.0 |
| mcbiopi | 1.1.6 | MCL | 1.0 |
| mclust | 6.1.1 | mclustcomp | 0.3.3 |
| mcmc | 0.9-8 | MCMCglmm | 2.36 |
| MCMCpack | 1.7-1 | MCMCprecision | 0.4.2 |
| mco | 1.17 | mcr | 1.3.3.1 |
| mCSEAdata | 1.28.0 | mdp | 1.28.0 |
| mdqc | 1.70.0 | MDTS | 1.28.0 |
| MeasurementError.cor | 1.80.0 | mediation | 4.5.1 |
| MEDIPS | 1.60.0 | mefa | 3.2-10 |
| megadepth | 1.18.0 | MEIGOR | 1.42.0 |
| Melissa | 1.24.0 | memes | 1.16.0 |
| memoise | 2.0.1 | memuse | 4.2-3 |
| Mergeomics | 1.36.0 | MeSHDbi | 1.44.0 |
| MesKit | 1.18.0 | MESS | 0.5.12 |
| messina | 1.44.0 | metabCombiner | 1.18.0 |
| metabinR | 1.10.0 | MetaboAnnotation | 1.12.0 |
| MetaboCoreUtils | 1.16.1 | metaboliteIDmapping | 1.0.0 |
| metabolomicsWorkbenchR | 1.18.0 | metabomxtr | 1.42.0 |
| metaCCA | 1.36.0 | MetaCycle | 1.2.0 |
| metadat | 1.4-0 | metafor | 4.8-0 |
| metagene2 | 1.24.0 | metagenomeSeq | 1.50.0 |
| metahdep | 1.66.0 | MetaNeighbor | 1.28.0 |
| metap | 1.12 | metapod | 1.16.0 |
| metapone | 1.14.0 | metaSeq | 1.48.0 |
| MetBrewer | 0.2.0 | MetCirc | 1.38.0 |
| methimpute | 1.30.0 | MethPed | 1.36.0 |
| methrix | 1.22.1 | MethTargetedNGS | 1.40.0 |
| methylKit | 1.34.0 | MethylMix | 2.38.0 |
| methylMnM | 1.46.0 | methylscaper | 1.16.0 |
| MethylSeekR | 1.48.0 | MetID | 1.26.0 |
| MetNet | 1.26.1 | metR | 0.18.2 |
| mfa | 1.30.0 | Mfuzz | 2.68.0 |
| MGFM | 1.42.0 | MGFR | 1.34.0 |
| MGLM | 0.2.1 | mgsa | 1.56.0 |
| mgsub | 1.7.3 | mhsmm | 0.4.21 |
| mia | 1.16.1 | miaSim | 1.14.0 |
| mice | 3.18.0 | MiChip | 1.62.0 |
| microbenchmark | 1.5.0 | microbiome | 1.30.0 |
| microbiomeDASim | 1.22.0 | microbiomeMarker | 1.12.2 |
| MicrobiomeStat | 1.2 | MicrobiotaProcess | 1.20.1 |
| microRNA | 1.66.0 | microSTASIS | 1.8.0 |
| miloR | 2.4.1 | mimager | 1.32.0 |
| mime | 0.13 | mina | 1.16.0 |
| minet | 3.66.0 | miniUI | 0.1.2 |
| minpack.lm | 1.2-4 | minqa | 1.2.8 |
| MiPP | 1.80.0 | miQC | 1.16.0 |
| MiRaGE | 1.50.0 | mirbase.db | 1.2.1 |
| miRBaseConverter | 1.32.0 | miRBaseVersions.db | 1.1.0 |
| miRcomp | 1.38.1 | miRcompData | 1.38.0 |
| mirIntegrator | 1.38.0 | miRNAmeConverter | 1.36.0 |
| miRNApath | 1.68.0 | miRNAtap | 1.42.0 |
| mirTarRnaSeq | 1.16.0 | misc3d | 0.9-1 |
| miscTools | 0.6-28 | missForest | 1.5 |
| missRows | 1.28.0 | mistyR | 1.16.0 |
| mitch | 1.20.0 | mitml | 0.4-5 |
| mitools | 2.4 | mixOmics | 6.32.0 |
| mixsmsn | 1.1-11 | mixsqp | 0.3-54 |
| mixtools | 2.0.0.1 | MKmisc | 1.9 |
| mlapi | 0.1.1 | mlbench | 2.1-6 |
| MLInterfaces | 1.88.1 | MLP | 1.56.0 |
| mlr3 | 1.1.0 | mlr3learners | 0.12.0 |
| mlr3measures | 1.1.0 | mlr3misc | 0.18.0 |
| mlr3tuning | 1.4.0 | MLSeq | 2.26.0 |
| mltools | 0.3.5 | mmand | 1.6.3 |
| mnem | 1.24.0 | mnormt | 2.1.1 |
| moanin | 1.16.1 | mockery | 0.4.5 |
| MODA | 1.34.0 | ModCon | 1.16.0 |
| modeest | 2.4.0 | ModelMetrics | 1.2.2.2 |
| modelr | 0.1.11 | modeltools | 0.2-24 |
| Modstrings | 1.24.0 | MOFA2 | 1.18.0 |
| MOFAdata | 1.24.0 | MOGAMUN | 1.18.0 |
| mogsa | 1.42.0 | MoleculeExperiment | 1.8.0 |
| MOMA | 1.20.0 | moments | 0.14.1 |
| monocle | 2.36.0 | mosaicCore | 0.9.5 |
| mosaics | 2.46.0 | mosbi | 1.14.0 |
| motifcounter | 1.32.0 | MotifDb | 1.50.0 |
| MouseFM | 1.18.0 | MPFE | 1.44.0 |
| mpm | 1.0-23 | mpra | 1.30.1 |
| MPRAnalyze | 1.26.0 | mrfDepth | 1.0.17 |
| mRMRe | 2.1.2.2 | msa | 1.40.0 |
| MSA2dist | 1.12.0 | MsBackendMassbank | 1.16.1 |
| MsBackendMgf | 1.16.0 | MsBackendMsp | 1.12.0 |
| MsBackendRawFileReader | 1.14.0 | MsBackendSql | 1.8.0 |
| MsCoreUtils | 1.20.0 | msdata | 0.48.0 |
| MsExperiment | 1.10.1 | MsFeatures | 1.16.0 |
| msgps | 1.3.5 | msigdb | 1.16.0 |
| msigdbr | 25.1.1 | msImpute | 1.18.0 |
| mslp | 1.10.0 | msm | 1.8.2 |
| MSnbase | 2.34.1 | msPurity | 1.34.0 |
| msqrob2 | 1.16.0 | MSstats | 4.16.1 |
| MSstatsBig | 1.6.0 | MSstatsConvert | 1.18.1 |
| MSstatsLOBD | 1.16.0 | MSstatsPTM | 2.10.3 |
| MSstatsShiny | 1.10.0 | MSstatsTMT | 2.16.0 |
| MuData | 1.12.0 | MuDataSeurat | 0.0.0.9000 |
| Mulcom | 1.58.0 | multcomp | 1.4-28 |
| multcompView | 0.1-10 | MultiAssayExperiment | 1.34.0 |
| MultiBaC | 1.18.0 | multiClust | 1.38.0 |
| multicool | 1.0.1 | MultiDataSet | 1.36.0 |
| multiGSEA | 1.18.0 | multiHiCcompare | 1.26.0 |
| MultiMed | 2.30.0 | multiMiR | 1.30.0 |
| MultimodalExperiment | 1.8.0 | multiscan | 1.68.0 |
| multitaper | 1.0-17 | multtest | 2.64.0 |
| MuMIn | 1.48.11 | mumosa | 1.16.0 |
| muscle | 3.50.0 | mutoss | 0.1-13 |
| MVCClass | 1.82.0 | mvnfast | 0.2.8 |
| mvoutlier | 2.1.1 | mvtnorm | 1.3-3 |
| mwcsr | 0.1.9 | mzID | 1.46.0 |
| mzR | 2.42.0 | nabor | 0.5.0 |
| NADA | 1.6-1.2 | naivebayes | 1.0.0 |
| naniar | 1.1.0 | nanoarrow | 0.7.0 |
| nanoparquet | 0.4.2 | NanoStringDiff | 1.38.0 |
| NanoStringNCTools | 1.16.1 | nanotime | 0.3.12 |
| NanoTube | 1.14.0 | naturalsort | 0.1.3 |
| NBAMSeq | 1.24.1 | NbClust | 3.0.1 |
| NBPSeq | 0.3.1 | ncdf4 | 1.24 |
| ncdfFlow | 2.54.0 | NCIgraph | 1.56.0 |
| NCmisc | 1.2.0 | ncRNAtools | 1.18.0 |
| ndexr | 1.30.0 | Nebulosa | 1.18.0 |
| nempi | 1.16.0 | NetActivity | 1.10.0 |
| NetActivityData | 1.10.0 | nethet | 1.40.0 |
| NetPathMiner | 1.44.0 | netprioR | 1.34.0 |
| NetRep | 1.2.8 | netresponse | 1.68.0 |
| network | 1.19.0 | networkD3 | 0.4.1 |
| NewWave | 1.18.0 | NGLVieweR | 1.4.0 |
| ngsReports | 2.10.0 | nipals | 1.0 |
| nipalsMCIA | 1.6.0 | NISTunits | 1.0.1 |
| nleqslv | 3.3.5 | nloptr | 2.2.1 |
| NLP | 0.3-2 | nls2 | 0.3-4 |
| NMF | 0.28 | NMI | 2.0 |
| nnlasso | 0.3 | nnls | 1.6 |
| nnNorm | 2.72.0 | nnSVG | 1.12.0 |
| nnTensor | 1.3.0 | NOISeq | 2.52.0 |
| nondetects | 2.38.1 | nor1mix | 1.3-3 |
| norm | 1.0-11.1 | normalize450K | 1.36.0 |
| normr | 1.34.0 | nortest | 1.0-4 |
| Nozzle.R1 | 1.1-1.1 | np | 0.60-18 |
| NPARC | 1.20.0 | nsga2R | 1.1 |
| NTW | 1.58.0 | nucleoSim | 1.36.0 |
| nucleR | 2.40.0 | nuCpos | 1.26.0 |
| nullranges | 1.14.0 | numbers | 0.8-5 |
| numDeriv | 2016.8-1.1 | NuPoP | 2.16.0 |
| NxtIRFdata | 1.14.0 | objectProperties | 0.6.8 |
| objectSignals | 0.10.3 | occugene | 1.68.0 |
| OCplus | 1.82.0 | octad.db | 1.10.0 |
| odseq | 1.36.0 | officer | 0.7.0 |
| oligo | 1.72.0 | oligoClasses | 1.70.0 |
| OLIN | 1.86.0 | OLINgui | 1.82.0 |
| OmaDB | 2.24.0 | omicade4 | 1.48.0 |
| OmicCircos | 1.46.0 | omicplotR | 1.28.0 |
| OMICsPCAdata | 1.26.0 | omicsPrint | 1.28.0 |
| Omixer | 1.18.0 | OmnipathR | 3.16.2 |
| ompBAM | 1.12.0 | oncomix | 1.30.0 |
| oncoscanR | 1.10.0 | OncoScore | 1.36.0 |
| onlineFDR | 2.16.0 | ontologyIndex | 2.12 |
| ontologyPlot | 1.7 | ontoProc | 2.2.1 |
| opencpu | 2.2.14 | openCyto | 2.20.1 |
| openPrimeR | 1.30.1 | openssl | 2.3.3 |
| openxlsx | 4.2.8 | operator.tools | 1.6.3 |
| oposSOM | 2.26.0 | oppti | 1.21.0 |
| optimalFlow | 1.20.0 | optimalFlowData | 1.20.0 |
| optimx | 2025-4.9 | optparse | 1.7.5 |
| OPWeight | 1.30.0 | OrderedList | 1.80.0 |
| ordinal | 2023.12-4.1 | ore | 1.7.5.1 |
| org.Bt.eg.db | 3.21.0 | org.Ce.eg.db | 3.21.0 |
| org.Dm.eg.db | 3.21.0 | org.Dr.eg.db | 3.21.0 |
| org.Hs.eg.db | 3.21.0 | org.Mm.eg.db | 3.21.0 |
| org.Rn.eg.db | 3.21.0 | org.Sc.sgd.db | 3.21.0 |
| Organism.dplyr | 1.36.0 | OrgMassSpecR | 0.5-3 |
| origami | 1.0.7 | orthosData | 1.6.0 |
| OSAT | 1.56.0 | Oscope | 1.38.0 |
| osqp | 0.6.3.3 | OTUbase | 1.58.0 |
| outliers | 0.15 | OVESEG | 1.24.0 |
| packFinder | 1.20.0 | PADOG | 1.50.0 |
| paintmap | 1.0 | PAIRADISE | 1.24.1 |
| paircompviz | 1.46.0 | PairedData | 1.1.1 |
| pairkat | 1.14.0 | pairsD3 | 0.1.3 |
| paletteer | 1.6.0 | palmerpenguins | 0.1.1 |
| pals | 1.10 | pamr | 1.57 |
| pan | 1.9 | pandaR | 1.40.0 |
| pander | 0.6.6 | panelcn.mops | 1.30.0 |
| panp | 1.78.0 | PANR | 1.54.0 |
| paradox | 1.0.1 | parallelDist | 0.2.6 |
| ParallelLogger | 3.5.0 | parallelly | 1.45.1 |
| parameters | 0.28.1 | parglms | 1.40.0 |
| parmigene | 1.1.1 | parody | 1.66.1 |
| partCNV | 1.6.0 | partykit | 1.2-24 |
| PAST | 1.24.0 | pastecs | 1.4.2 |
| patchwork | 1.3.2 | Path2PPI | 1.38.0 |
| pathifier | 1.46.0 | PathNet | 1.48.0 |
| PathoStat | 1.34.0 | pathRender | 1.76.0 |
| pathview | 1.48.0 | pathwayPCA | 1.24.0 |
| paws.common | 0.8.5 | paws.storage | 0.9.0 |
| pbapply | 1.7-4 | pbdZMQ | 0.3-14 |
| pbivnorm | 0.6.0 | pbkrtest | 0.5.5 |
| pbmcapply | 1.5.1 | pcalg | 2.7-12 |
| pcaMethods | 2.0.0 | PCAN | 1.36.0 |
| pcaPP | 2.0-5 | PCAtools | 2.20.0 |
| pd.mapping50k.xba240 | 3.12.0 | pdfCluster | 1.0-4 |
| pdftools | 3.5.0 | pdInfoBuilder | 1.72.0 |
| pdist | 1.2.1 | PeacoQC | 1.18.0 |
| PECA | 1.44.0 | penalized | 0.9-52 |
| pengls | 1.14.0 | PepsNMR | 1.26.0 |
| pepStat | 1.42.0 | Peptides | 2.4.6 |
| pepXMLTab | 1.42.0 | PerformanceAnalytics | 2.0.8 |
| permute | 0.9-8 | PFAM.db | 3.21.0 |
| pfamAnalyzeR | 1.8.0 | pgca | 1.32.0 |
| phangorn | 2.12.1 | phantasus | 1.28.0 |
| phantasusLite | 1.6.0 | PharmacoGx | 3.12.2 |
| phastCons100way.UCSC.hg38 | 3.7.1 | pheatmap | 1.0.13 |
| PhenoGeneRanker | 1.16.0 | phenopath | 1.32.0 |
| philentropy | 0.9.0 | philr | 1.34.0 |
| PhIPData | 1.16.1 | phosphonormalizer | 1.32.0 |
| phosphoricons | 0.2.1 | phyclust | 0.1-34 |
| phylobase | 0.8.12 | phylogram | 2.1.0 |
| phylolm | 2.6.5 | PhyloProfile | 2.0.6 |
| phyloseq | 1.52.0 | piano | 2.24.0 |
| pickgene | 1.80.0 | PICS | 2.50.0 |
| pillar | 1.11.0 | pinfsc50 | 1.3.0 |
| pingr | 2.0.5 | pipeFrame | 1.24.0 |
| pixmap | 0.4-14 | pkgbuild | 1.4.8 |
| pkgconfig | 2.0.3 | pkgdown | 2.1.3 |
| pkgload | 1.4.0 | planet | 1.16.0 |
| planttfhunter | 1.8.0 | plasmut | 1.6.0 |
| plgem | 1.80.0 | plier | 1.78.0 |
| plogr | 0.2.0 | plot3D | 1.4.2 |
| plot3Drgl | 1.0.5 | plotgardener | 1.14.0 |
| plotly | 4.11.0 | plotmo | 3.6.4 |
| plotrix | 3.8-4 | plotROC | 2.3.3 |
| PLPE | 1.68.0 | pls | 2.8-5 |
| plsgenomics | 1.5-3 | plsVarSel | 0.9.13 |
| plyr | 1.8.9 | plyranges | 1.28.0 |
| PMA | 1.2-4 | PMCMRplus | 1.9.12 |
| pmm | 1.40.0 | pmp | 1.20.0 |
| png | 0.1-8 | PoDCall | 1.16.0 |
| poibin | 1.6 | PoiClaClu | 1.0.2.1 |
| polspline | 1.1.25 | Polychrome | 1.5.4 |
| polyclip | 1.10-7 | polylabelr | 0.3.0 |
| polynom | 1.4-1 | PolynomF | 2.0-8 |
| poorman | 0.2.7 | posterior | 1.6.1 |
| poweRlaw | 1.0.0 | powerTCR | 1.28.0 |
| POWSC | 1.16.0 | ppclust | 1.1.0.1 |
| ppcor | 1.1 | ppcseq | 1.16.0 |
| PPInfer | 1.34.0 | pqsfinder | 2.24.0 |
| prabclus | 2.3-4 | pracma | 2.4.4 |
| praise | 1.0.0 | pram | 1.24.0 |
| praznik | 11.0.0 | prebs | 1.48.0 |
| precrec | 0.14.5 | PREDA | 1.54.0 |
| preprocessCore | 1.70.0 | preseqR | 4.0.0 |
| prettydoc | 0.4.1 | prettyunits | 1.2.0 |
| PRIMME | 3.2-6 | princurve | 2.1.6 |
| prismatic | 1.1.2 | pROC | 1.19.0.1 |
| PROcess | 1.84.0 | processx | 3.8.6 |
| procoil | 2.36.0 | proDA | 1.22.1 |
| prodlim | 2025.04.28 | profileModel | 0.6.1 |
| profileScoreDist | 1.36.0 | profmem | 0.7.0 |
| profvis | 0.4.0 | progeny | 1.30.0 |
| progress | 1.2.3 | progressr | 0.15.1 |
| proj4 | 1.0-15 | projectR | 1.24.0 |
| PROMISE | 1.60.0 | promises | 1.3.3 |
| PROPER | 1.40.0 | proteinProfiles | 1.48.0 |
| ProteoMM | 1.26.0 | ProtGenerics | 1.40.0 |
| proto | 1.0.0 | protolite | 2.3.1 |
| protr | 1.7-5 | protViz | 0.7.9 |
| proxy | 0.4-27 | proxyC | 0.5.2 |
| PRROC | 1.4 | pryr | 0.1.6 |
| ps | 1.9.1 | PSCBS | 0.68.0 |
| pscl | 1.5.9 | PSMatch | 1.12.0 |
| pspline | 1.0-21 | psych | 2.5.6 |
| ptw | 1.9-16 | puma | 3.50.0 |
| purrr | 1.1.0 | pvac | 1.56.0 |
| pvca | 1.48.0 | pvclust | 2.2-0 |
| pwalign | 1.4.0 | PWMEnrich | 4.44.0 |
| pwr | 1.3-0 | qap | 0.1-2 |
| qckitfastq | 1.24.0 | qcmetrics | 1.46.0 |
| qdapRegex | 0.7.10 | qdapTools | 1.3.7 |
| QDNAseq | 1.44.0 | QFeatures | 1.18.0 |
| qgraph | 1.9.8 | qlcMatrix | 0.9.9 |
| qpcrNorm | 1.66.0 | qpdf | 1.4.1 |
| qpgraph | 2.42.0 | qqconf | 1.3.2 |
| qqman | 0.1.9 | qs | 0.27.3 |
| qsea | 1.34.0 | QSutils | 1.26.0 |
| qtl | 1.70 | QTLExperiment | 2.0.1 |
| Qtlizer | 1.22.0 | quadprog | 1.5-8 |
| qualV | 0.3-5 | quanteda | 4.3.1 |
| quantiseqr | 1.16.0 | quantmod | 0.4.28 |
| quantreg | 6.1 | quantsmooth | 1.74.0 |
| quarto | 1.5.1 | QuaternaryProd | 1.42.0 |
| QUBIC | 1.36.0 | questionr | 0.8.1 |
| QuickJSR | 1.8.0 | quitefastmst | 0.9.0 |
| qusage | 2.42.0 | qvalue | 2.40.0 |
| qvcalc | 1.0.4 | R.cache | 0.17.0 |
| R.devices | 2.17.2 | R.filesets | 2.15.1 |
| R.huge | 0.10.1 | R.matlab | 3.7.0 |
| R.methodsS3 | 1.8.2 | R.oo | 1.27.1 |
| R.rsp | 0.46.0 | R.utils | 2.13.0 |
| R2HTML | 2.3.4 | R2jags | 0.8-9 |
| R2WinBUGS | 2.1-23 | r3Cseq | 1.54.0 |
| R4RNA | 1.36.0 | R6 | 2.6.1 |
| R6P | 0.4.0 | RadioGx | 2.12.0 |
| rafalib | 1.0.4 | ragg | 1.5.0 |
| RaggedExperiment | 1.32.2 | rain | 1.42.0 |
| rainbow | 3.8 | ramr | 1.14.0 |
| ramwas | 1.32.0 | randomcoloR | 1.1.0.1 |
| randomForest | 4.7-1.2 | randomizr | 1.0.0 |
| randPack | 1.54.0 | randRotation | 1.20.0 |
| randtests | 1.0.2 | randtoolbox | 2.0.5 |
| ranger | 0.17.0 | RankAggreg | 0.6.6 |
| RankProd | 3.34.0 | RANN | 2.6.2 |
| rapiclient | 0.1.8 | rapidjsonr | 1.2.0 |
| RApiSerialize | 0.1.4 | rappdirs | 0.3.3 |
| rapportools | 1.2 | RAREsim | 1.12.0 |
| rARPACK | 0.11-0 | Rarr | 1.8.0 |
| raster | 3.6-32 | rawrr | 1.16.0 |
| RbcBook1 | 1.76.0 | rBeta2009 | 1.0.1 |
| RBGL | 1.84.0 | rbibutils | 2.3 |
| RBioFormats | 1.8.0 | RBioinf | 1.68.0 |
| rbiom | 2.2.1 | rBiopaxParser | 2.48.0 |
| RBM | 1.40.0 | rbokeh | 0.5.1 |
| Rbowtie | 1.48.0 | Rbowtie2 | 2.14.0 |
| rbsurv | 2.66.0 | Rbwa | 1.12.0 |
| RCASPAR | 1.54.0 | rcdk | 3.8.1 |
| rcdklibs | 2.9 | rcellminer | 2.30.1 |
| rcellminerData | 2.30.0 | RCircos | 1.2.2 |
| rclipboard | 0.2.1 | RCM | 1.24.0 |
| rcmdcheck | 1.4.0 | Rcollectl | 1.8.0 |
| RColorBrewer | 1.1-3 | Rcpi | 1.44.0 |
| Rcpp | 1.1.0 | RcppAlgos | 2.9.3 |
| RcppAnnoy | 0.0.22 | RcppArmadillo | 15.0.1-1 |
| RcppCCTZ | 0.2.13 | RcppDate | 0.0.6 |
| RcppDE | 0.1.8 | RcppDist | 0.1.1.1 |
| RcppEigen | 0.3.4.0.2 | RcppGSL | 0.3.13 |
| RcppHNSW | 0.6.0 | RcppInt64 | 0.0.5 |
| RcppML | 0.3.7 | RcppNumerical | 0.6-0 |
| RcppParallel | 5.1.11-1 | RcppProgress | 0.4.2 |
| RcppRoll | 0.3.1 | RcppSpdlog | 0.0.22 |
| RcppThread | 2.2.0 | RcppTOML | 0.2.3 |
| RCSL | 1.16.0 | RCurl | 1.98-1.17 |
| Rcwl | 1.24.0 | RcwlPipelines | 1.24.0 |
| RCX | 1.12.0 | RCy3 | 2.28.1 |
| RCyjs | 2.30.0 | Rdisop | 1.68.0 |
| rdist | 0.0.5 | Rdpack | 2.6.4 |
| RDRToolbox | 1.58.0 | reactable | 0.4.4 |
| reactome.db | 1.92.0 | ReactomeGSA | 1.22.0 |
| reactR | 0.6.1 | readbitmap | 0.1.5 |
| reader | 1.0.6 | readJDX | 0.6.4 |
| ReadqPCR | 1.54.0 | readr | 2.1.5 |
| readxl | 1.4.5 | rearrr | 0.3.5 |
| REBET | 1.26.0 | rebook | 1.18.0 |
| rebus | 0.1-3 | rebus.base | 0.0-3 |
| rebus.datetimes | 0.0-2 | rebus.numbers | 0.0-1.1 |
| rebus.unicode | 0.0-2 | receptLoss | 1.20.0 |
| recipes | 1.3.1 | reconsi | 1.20.0 |
| RecordLinkage | 0.4-12.5 | recount3 | 1.18.0 |
| RedeR | 3.4.0 | RedisParam | 1.10.0 |
| redux | 1.1.5 | RefManageR | 1.4.0 |
| reformulas | 0.4.1 | regionalpcs | 1.6.0 |
| regioneR | 1.40.1 | registry | 0.5-1 |
| regsplice | 1.34.1 | relations | 0.6-15 |
| reldist | 1.7-2 | relimp | 1.0-5 |
| remaCor | 0.0.20 | rematch | 2.0.0 |
| rematch2 | 2.1.2 | remotes | 2.5.0 |
| rentrez | 1.2.4 | renv | 1.1.5 |
| Repitools | 1.54.0 | repmis | 0.5.1 |
| repo | 2.1.5 | reportr | 1.3.1 |
| repr | 1.1.7 | reprex | 2.1.1 |
| RepViz | 1.24.0 | reshape | 0.8.10 |
| reshape2 | 1.4.4 | ResidualMatrix | 1.18.0 |
| restfulr | 0.0.16 | reticulate | 1.43.0 |
| retrofit | 1.8.0 | ReUseData | 1.8.0 |
| rex | 1.2.1 | rfaRm | 1.20.0 |
| Rfast | 2.1.5.1 | Rfastp | 1.18.0 |
| rfPred | 1.46.0 | rGADEM | 2.55.0 |
| rGenomeTracksData | 0.99.0 | rgl | 1.3.24 |
| rgoslin | 1.12.0 | RGraph2js | 1.36.0 |
| Rgraphviz | 2.52.0 | RGSEA | 1.42.0 |
| rhandsontable | 0.3.8 | rhdf5 | 2.52.1 |
| rhdf5client | 1.30.0 | rhdf5filters | 1.20.0 |
| Rhdf5lib | 1.30.0 | RhpcBLASctl | 0.23-42 |
| Rhtslib | 3.4.0 | ribor | 1.20.0 |
| riboSeqR | 1.42.0 | ridge | 3.3 |
| rifiComparative | 1.8.0 | RImmPort | 1.36.0 |
| rintrojs | 0.3.4 | rio | 1.2.3 |
| RISmed | 2.3.0 | RITANdata | 1.32.0 |
| RIVER | 1.32.0 | rjags | 4-17 |
| rJava | 1.0-11 | rjson | 0.2.23 |
| rjsoncons | 1.3.2 | RJSONIO | 2.0.0 |
| Rlab | 4.0 | rlang | 1.1.6 |
| RLassoCox | 1.16.0 | RLHub | 0.99.5 |
| rlist | 0.4.6.2 | RLMM | 1.70.0 |
| Rmagpie | 1.64.0 | RMariaDB | 1.3.4 |
| rmarkdown | 2.29 | rmdformats | 1.0.4 |
| rmelting | 1.24.0 | rmeta | 3.0 |
| rmio | 0.4.0 | Rmisc | 1.5.1 |
| Rmixmod | 2.1.10 | Rmpfr | 1.1-1 |
| Rmpi | 0.7-3.3 | rms | 8.0-0 |
| rmspc | 1.14.0 | RMTstat | 0.3.1 |
| rmutil | 1.1.10 | RMySQL | 0.11.1 |
| rmzqc | 0.7.0 | RNAdecay | 1.28.0 |
| RNAsense | 1.22.0 | rnaseqcomp | 1.38.0 |
| RNAseqCovarImpute | 1.6.0 | RNASeqPower | 1.48.0 |
| RnaSeqSampleSizeData | 1.40.0 | RnBeads.hg19 | 1.40.0 |
| RnBeads.hg38 | 1.40.0 | rncl | 0.8.7 |
| RNeXML | 2.4.11 | rngtools | 1.5.2 |
| rngWELL | 0.10-10 | RNifti | 1.8.0 |
| Rnits | 1.42.0 | RNOmni | 1.0.1.2 |
| roar | 1.44.1 | roastgsa | 1.6.0 |
| robslopes | 1.1.3 | robust | 0.7-5 |
| robustbase | 0.99-6 | RobustRankAggreg | 1.2.1 |
| ROC | 1.84.0 | ROCit | 2.1.2 |
| ROCpAI | 1.20.0 | ROCR | 1.0-11 |
| ROI | 1.0-1 | ROI.plugin.lpsolve | 1.0-2 |
| RolDE | 1.12.0 | rols | 3.4.0 |
| ROntoTools | 2.36.0 | Rook | 1.2 |
| rootSolve | 1.8.2.4 | ropls | 1.40.0 |
| roptim | 0.1.6 | rorcid | 0.7.0 |
| ROSeq | 1.20.0 | ROTS | 2.0.0 |
| roxygen2 | 7.3.3 | RPA | 1.64.0 |
| rpart.plot | 3.1.3 | RPMM | 1.25 |
| rprimer | 1.12.0 | rprojroot | 2.1.1 |
| RProtoBufLib | 2.20.0 | rpx | 2.16.0 |
| rqubic | 1.54.0 | rrcov | 1.7-7 |
| rRDP | 1.42.0 | RRHO | 1.48.0 |
| rrvgo | 1.20.0 | rsample | 1.3.1 |
| Rsamtools | 2.24.0 | rsbml | 2.66.0 |
| rScudo | 1.24.0 | rsemmed | 1.18.0 |
| RSeqAn | 1.28.0 | RSKC | 2.4.2 |
| rslurm | 0.6.2 | rsm | 2.10.6 |
| RSNNS | 0.4-17 | Rsolnp | 2.0.1 |
| rsparse | 0.5.3 | RSpectra | 0.16-2 |
| rSpectral | 1.0.0.10 | rsq | 2.7 |
| RSQLite | 2.4.3 | rstan | 2.32.7 |
| rstantools | 2.5.0 | rstatix | 0.7.2 |
| rstudioapi | 0.17.1 | Rsubread | 2.22.1 |
| rsvd | 1.0.5 | rsvg | 2.6.2 |
| RSVSim | 1.48.0 | rSWeeP | 1.20.0 |
| RTCA | 1.60.0 | rTensor | 1.4.9 |
| RTopper | 1.54.0 | Rtpca | 1.18.0 |
| rtracklayer | 1.68.0 | Rtreemix | 1.69.0 |
| RTriangle | 1.6-0.15 | rTRM | 1.46.0 |
| Rtsne | 0.17 | Rttf2pt1 | 1.3.12 |
| runibic | 1.30.0 | RUnit | 0.4.33.1 |
| ruv | 0.9.7.1 | RUVcorr | 1.40.0 |
| RUVnormalize | 1.42.0 | RUVnormalizeData | 1.28.0 |
| rversions | 2.1.2 | rvest | 1.0.5 |
| rvinecopulib | 0.7.3.1.0 | Rvisdiff | 1.6.0 |
| RVS | 1.30.0 | RWeka | 0.4-46 |
| RWekajars | 3.9.3-2 | rWikiPathways | 1.28.0 |
| s2 | 1.1.9 | S4Arrays | 1.8.1 |
| s4vd | 1.1-1 | S4Vectors | 0.46.0 |
| S7 | 0.2.0 | safe | 3.48.0 |
| safetensors | 0.2.0 | sagenhaft | 1.78.0 |
| SAIGEgds | 2.6.0 | sampleClassifier | 1.32.0 |
| sampling | 2.11 | SamSPECTRAL | 1.62.0 |
| sandwich | 3.1-1 | sangeranalyseR | 1.18.0 |
| sangerseqR | 1.44.0 | SANTA | 2.44.0 |
| sarks | 1.20.0 | sass | 0.4.10 |
| satuRn | 1.16.0 | SAVER | 1.1.2 |
| SBGNview | 1.22.0 | SBGNview.data | 1.22.0 |
| SBMLR | 2.4.0 | SC3 | 1.36.0 |
| Scale4C | 1.30.0 | ScaledMatrix | 1.16.0 |
| scales | 1.4.0 | scam | 1.2-19 |
| scanMiR | 1.14.0 | scanMiRData | 1.14.0 |
| scAnnotatR | 1.14.0 | SCANVIS | 1.22.0 |
| SCArray | 1.16.0 | SCArray.sat | 1.8.0 |
| scater | 1.36.0 | scatterHatch | 1.14.0 |
| scattermore | 1.2 | scatterpie | 0.2.5 |
| scatterplot3d | 0.3-44 | SCBN | 1.26.0 |
| scBubbletree | 1.10.0 | sccomp | 2.0.0 |
| scCustomize | 3.1.3 | scDataviz | 1.18.0 |
| scDblFinder | 1.22.0 | scDD | 1.32.0 |
| scDDboost | 1.10.0 | scde | 2.36.0 |
| scDesign3 | 1.6.0 | scds | 1.24.0 |
| SCFA | 1.18.0 | scFeatureFilter | 1.28.0 |
| scGPS | 1.22.0 | schex | 1.22.0 |
| scHOT | 1.20.1 | scico | 1.5.0 |
| scider | 1.6.0 | scifer | 1.10.0 |
| scmap | 1.30.0 | scMET | 1.10.0 |
| SCnorm | 1.30.1 | Sconify | 1.28.0 |
| scp | 1.18.0 | scPCA | 1.22.0 |
| scPipe | 2.8.0 | scran | 1.36.0 |
| scReClassify | 1.14.0 | scRecover | 1.24.0 |
| screenCounter | 1.8.0 | ScreenR | 1.10.0 |
| scRepertoire | 2.4.0 | scrime | 1.3.5 |
| scry | 1.20.0 | scrypt | 0.1.6 |
| scs | 3.2.7 | scShapes | 1.14.0 |
| scTGIF | 1.22.0 | scTHI | 1.20.0 |
| sctransform | 0.4.2 | scuttle | 1.18.0 |
| SDAMS | 1.28.0 | sechm | 1.16.0 |
| segmented | 2.1-4 | segmentSeq | 2.42.0 |
| selectr | 0.4-2 | SELEX | 1.40.0 |
| SemDist | 1.42.0 | semisup | 1.32.0 |
| sendmailR | 1.4-0 | seq.hotSPOT | 1.8.0 |
| seq2pathway | 1.40.0 | seq2pathway.data | 1.40.0 |
| seqArchR | 1.12.0 | SeqArray | 1.48.2 |
| seqcombo | 1.30.0 | SeqGate | 1.18.0 |
| SeqGSEA | 1.48.0 | seqinr | 4.2-36 |
| seqLogo | 1.74.0 | seqmagick | 0.1.7 |
| seqminer | 9.7 | seqPattern | 1.40.0 |
| seqsetvis | 1.28.0 | SeqSQC | 1.30.0 |
| seqTools | 1.42.0 | SeqVarTools | 1.46.0 |
| seriation | 1.5.8 | servr | 0.32 |
| sesameData | 1.26.0 | sessioninfo | 1.2.3 |
| setRNG | 2024.2-1 | sets | 1.0-25 |
| settings | 0.2.7 | Seurat | 5.3.0 |
| SeuratObject | 5.2.0 | sevenbridges | 1.38.0 |
| sevenC | 1.28.0 | sf | 1.0-21 |
| sfheaders | 0.4.4 | sfsmisc | 1.1-22 |
| sftime | 0.3.1 | sgeostat | 1.0-27 |
| SGSeq | 1.42.1 | shades | 1.4.0 |
| shadowtext | 0.1.6 | shape | 1.4.6.1 |
| SharedObject | 1.22.0 | shiny | 1.11.1 |
| shinyAce | 0.4.4 | shinyalert | 3.1.0 |
| shinyBS | 0.61.1 | shinybusy | 0.3.3 |
| shinycssloaders | 1.1.0 | shinycustomloader | 0.9.0 |
| shinyCyJS | 1.0.0 | shinydashboard | 0.7.3 |
| shinydashboardPlus | 2.0.6 | shinyFeedback | 0.4.0 |
| shinyFiles | 0.9.3 | shinyHeatmaply | 0.2.0 |
| shinyhelper | 0.3.2 | shinyjqui | 0.4.1 |
| shinyjs | 2.1.0 | shinylogs | 0.2.1 |
| shinymanager | 1.0.410 | shinyMatrix | 0.8.0 |
| shinymeta | 0.2.1 | shinyscreenshot | 0.2.1 |
| shinythemes | 1.2.0 | shinytitle | 0.1.0 |
| shinytoastr | 2.2.0 | shinyTree | 0.3.1 |
| shinyvalidate | 0.1.3 | shinyWidgets | 0.9.0 |
| ShortRead | 1.66.0 | SIAMCAT | 2.12.0 |
| SICtools | 1.38.0 | sigclust | 1.1.0.1 |
| sigFeature | 1.26.0 | SigFuge | 1.46.0 |
| siggenes | 1.82.0 | sights | 1.34.0 |
| Signac | 1.15.0 | signal | 1.8-1 |
| sigsquared | 1.40.0 | SIMAT | 1.40.0 |
| SimBu | 1.10.0 | SIMD | 1.26.0 |
| SimFFPE | 1.20.0 | similaRpeak | 1.40.0 |
| SIMLR | 1.34.0 | simona | 1.6.0 |
| simpIntLists | 1.44.0 | simpleCache | 0.4.2 |
| simpleSeg | 1.10.1 | simplifyEnrichment | 2.2.0 |
| sincell | 1.40.0 | SingleCellExperiment | 1.30.1 |
| SingleCellSignalR | 1.20.0 | SingleR | 2.10.0 |
| singscore | 1.28.0 | SiPSiC | 1.8.0 |
| sitePath | 1.24.0 | sitmo | 2.0.2 |
| sizepower | 1.78.0 | sjlabelled | 1.2.0 |
| sjmisc | 2.8.11 | skmeans | 0.2-18 |
| slalom | 1.30.0 | slam | 0.1-55 |
| slider | 0.3.2 | slingshot | 2.16.0 |
| SLqPCR | 1.74.0 | sm | 2.2-6.0 |
| SMAD | 1.24.0 | smatr | 3.4-8 |
| smoother | 1.3 | smoothie | 1.0-4 |
| smurf | 1.1.7 | sn | 2.1.1 |
| sna | 2.8 | SNAGEE | 1.48.0 |
| SNAGEEdata | 1.44.0 | snakecase | 0.11.1 |
| snapcount | 1.20.0 | snifter | 1.18.1 |
| snm | 1.56.0 | snow | 0.4-4 |
| SnowballC | 0.7.1 | snowfall | 1.84-6.3 |
| SNPediaR | 1.34.0 | SNPlocs.Hsapiens.dbSNP144.GRCh37 | 0.99.20 |
| SNPRelate | 1.42.0 | snpStats | 1.58.0 |
| softImpute | 1.4-3 | soGGi | 1.40.1 |
| som | 0.3-5.2 | SOMbrero | 1.4.4 |
| sonicLength | 1.4.7 | sortable | 0.5.0 |
| SoupX | 1.6.2 | sourcetools | 0.1.7-1 |
| sp | 2.2-0 | spacetime | 1.3-3 |
| spacexr | 1.0.0 | spam | 2.11-1 |
| Spaniel | 1.22.0 | sparcl | 1.0.4 |
| sparklyr | 1.9.1 | sparrow | 1.14.0 |
| SparseArray | 1.8.1 | SparseM | 1.84-2 |
| sparseMatrixStats | 1.20.0 | sparseMVN | 0.2.2 |
| sparsenetgls | 1.26.0 | sparsepca | 0.1.2 |
| sparsesvd | 0.2-3 | sparsevctrs | 0.3.4 |
| spaSim | 1.10.0 | SpatialCPie | 1.24.0 |
| spatialDE | 1.14.1 | SpatialDecon | 1.18.0 |
| SpatialExperiment | 1.18.1 | SpatialExtremes | 2.1-0 |
| SpatialFeatureExperiment | 1.10.1 | spatialHeatmap | 2.14.1 |
| SpatialOmicsOverlay | 1.8.0 | spatialreg | 1.4-2 |
| SpatialTools | 1.0.5 | spatstat.data | 3.1-8 |
| spatstat.explore | 3.5-2 | spatstat.geom | 3.5-0 |
| spatstat.random | 3.4-1 | spatstat.sparse | 3.1-0 |
| spatstat.univar | 3.1-4 | spatstat.utils | 3.1-5 |
| spBayes | 0.4-8 | spData | 2.3.4 |
| spdep | 1.4-1 | spdl | 0.0.5 |
| speaq | 2.7.0 | speckle | 1.8.0 |
| specL | 1.42.0 | SpeCond | 1.62.0 |
| Spectra | 1.18.2 | SpectralTAD | 1.24.0 |
| speedglm | 0.3-5 | SPEM | 1.48.0 |
| SPIA | 2.60.0 | SPIAT | 1.10.0 |
| spikeLI | 2.68.0 | spkTools | 1.64.0 |
| splancs | 2.01-45 | splatter | 1.32.0 |
| SplicingFactory | 1.16.0 | SplicingGraphs | 1.48.0 |
| splineTimeR | 1.36.0 | splitstackshape | 1.4.8 |
| splots | 1.74.0 | splus2R | 1.3-5 |
| SpotClean | 1.10.0 | SPOTlight | 1.12.1 |
| spqn | 1.20.0 | spsComps | 0.3.4.0 |
| SPsimSeq | 1.18.0 | spsUtil | 0.2.2 |
| SQLDataFrame | 1.22.0 | sqldf | 0.4-11 |
| SQUAREM | 2021.1 | squash | 1.0.9 |
| sRACIPE | 2.0.1 | SRAdb | 1.70.0 |
| ssc | 2.1-0 | sscu | 2.38.0 |
| sSeq | 1.46.0 | ssize | 1.82.0 |
| sSNAPPY | 1.12.0 | ssrch | 1.24.0 |
| ssviz | 1.42.0 | stable | 1.1.6 |
| stabledist | 0.7-2 | stabs | 0.6-4 |
| stageR | 1.30.1 | StanHeaders | 2.32.10 |
| stars | 0.6-8 | startupmsg | 1.0.0 |
| statebins | 1.4.0 | STATegRa | 1.44.0 |
| statip | 0.2.3 | statmod | 1.5.0 |
| statnet.common | 4.12.0 | statTarget | 1.38.0 |
| stemHypoxia | 1.44.0 | stepNorm | 1.80.0 |
| stJoincount | 1.10.0 | stopwords | 2.3 |
| storr | 1.2.6 | strawr | 0.0.92 |
| Streamer | 1.54.0 | strex | 2.0.1 |
| STRINGdb | 2.20.0 | stringdist | 0.9.15 |
| stringfish | 0.17.0 | stringi | 1.8.7 |
| stringr | 1.5.1 | strucchange | 1.5-4 |
| struct | 1.20.2 | Structstrings | 1.24.0 |
| structToolbox | 1.20.0 | styler | 1.10.3 |
| SubCellBarCode | 1.24.0 | subSeq | 1.38.0 |
| subspace | 1.0.4 | SUITOR | 1.10.0 |
| SummarizedExperiment | 1.38.1 | summarytools | 1.1.4 |
| Summix | 2.14.0 | superheat | 0.1.0 |
| SuperLearner | 2.0-29 | supersigs | 1.16.0 |
| SuppDists | 1.1-9.9 | supraHex | 1.40.0 |
| surfaltr | 1.14.0 | survcomp | 1.58.0 |
| survey | 4.4-8 | survivalROC | 1.0.3.1 |
| survivalsvm | 0.0.6 | survMisc | 0.5.6 |
| sva | 3.56.0 | svd | 0.5.8 |
| svglite | 2.2.1 | svgPanZoom | 0.3.4 |
| svMisc | 1.4.3 | svUnit | 1.0.8 |
| swamp | 1.5.1 | SWATH2stats | 1.38.0 |
| SwathXtend | 2.30.0 | swfdr | 1.34.0 |
| switchBox | 1.44.0 | switchde | 1.34.0 |
| sylly | 0.1-6 | sylly.en | 0.1-3 |
| synapsis | 1.14.0 | SynExtend | 1.20.2 |
| synlet | 2.8.0 | SynMut | 1.24.0 |
| syntenet | 1.10.2 | sys | 3.4.3 |
| systemfonts | 1.2.3 | systemPipeR | 2.14.2 |
| systemPipeShiny | 1.18.0 | systemPipeTools | 1.16.0 |
| syuzhet | 1.0.7 | tagcloud | 0.7.0 |
| tanggle | 1.14.0 | target | 1.22.0 |
| TargetScore | 1.46.0 | TargetSearch | 2.10.0 |
| TBX20BamSubset | 1.44.0 | TCA | 1.2.1 |
| TCC | 1.48.0 | TCGAbiolinks | 2.36.0 |
| TCGAbiolinksGUI.data | 1.28.0 | TCGAutils | 1.28.0 |
| tcltk2 | 1.6.1 | TCseq | 1.32.0 |
| TDbasedUFE | 1.8.0 | TeachingDemos | 2.13 |
| TEKRABber | 1.12.0 | tensor | 1.5.1 |
| tensorA | 0.36.2.1 | tensorflow | 2.20.0 |
| TENxIO | 1.10.2 | TENxPBMCData | 1.26.0 |
| TEQC | 4.30.0 | ternarynet | 1.52.0 |
| terra | 1.8-60 | tester | 0.2.0 |
| testthat | 3.2.3 | text2vec | 0.6.4 |
| textclean | 0.9.3 | textshape | 1.7.5 |
| textshaping | 1.0.3 | textstem | 0.1.4 |
| TFARM | 1.30.0 | tfautograph | 0.3.2 |
| TFBSTools | 1.46.0 | TFEA.ChIP | 1.28.0 |
| TFisher | 0.2.0 | TFMPvalue | 0.0.9 |
| tfruns | 1.5.4 | TFutils | 1.28.0 |
| TH.data | 1.1-4 | threejs | 0.3.4 |
| tibble | 3.3.0 | tictoc | 1.2.1 |
| tidybayes | 3.0.7 | tidybulk | 1.20.0 |
| tidydr | 0.0.6 | tidygraph | 1.3.1 |
| tidyHeatmap | 1.12.2 | tidyr | 1.3.1 |
| tidyselect | 1.2.1 | tidySingleCellExperiment | 1.18.1 |
| tidySummarizedExperiment | 1.18.1 | tidytext | 0.4.3 |
| tidytidbits | 0.3.3 | tidytree | 0.4.6 |
| tidyverse | 2.0.0 | tiff | 0.1-12 |
| tigre | 1.62.0 | tiledb | 0.32.0 |
| TileDBArray | 1.18.0 | tilingArray | 1.86.0 |
| timechange | 0.3.0 | timecourse | 1.80.0 |
| timeDate | 4041.110 | timeOmics | 1.20.0 |
| timescape | 1.32.0 | timeSeries | 4041.111 |
| timsac | 1.3.8-4 | tinytex | 0.57 |
| tippy | 0.1.0 | TissueEnrich | 1.28.0 |
| tkrplot | 0.0-30 | tkWidgets | 1.86.0 |
| tm | 0.7-16 | TMB | 1.9.17 |
| TMixClust | 1.30.0 | tmvtnorm | 1.7 |
| tnet | 3.0.16 | TnT | 1.30.0 |
| TOAST | 1.22.0 | toastui | 0.4.0 |
| tokenizers | 0.3.0 | tomoda | 1.18.0 |
| tomoseqr | 1.12.0 | topconfects | 1.24.0 |
| topGO | 2.60.1 | topicmodels | 0.2-17 |
| torch | 0.16.0 | ToxicoGx | 2.12.0 |
| TPP | 3.36.0 | TPP2D | 1.24.0 |
| tracktables | 1.42.0 | tractor.base | 3.4.5.1 |
| tradeSeq | 1.22.0 | TrajectoryGeometry | 1.16.0 |
| TrajectoryUtils | 1.16.1 | transformGamPoi | 1.14.0 |
| transformr | 0.1.5 | transite | 1.26.0 |
| tRanslatome | 1.46.0 | transomics2cytoscape | 1.18.0 |
| transport | 0.15-4 | TreeAndLeaf | 1.20.0 |
| treeio | 1.32.0 | treemap | 2.4-4 |
| TreeSummarizedExperiment | 2.16.1 | TREG | 1.12.0 |
| Trendy | 1.30.0 | TRESS | 1.14.0 |
| tricycle | 1.16.0 | triebeard | 0.4.1 |
| trio | 3.46.0 | triplex | 1.48.0 |
| tripr | 1.14.0 | tRNA | 1.26.0 |
| tRNAdbImport | 1.26.0 | tRNAscanImport | 1.28.0 |
| TRONCO | 2.40.0 | truncdist | 1.0-2 |
| truncnorm | 1.0-9 | trust | 0.1-8 |
| TSCAN | 1.46.0 | tseries | 0.10-58 |
| tsne | 0.1-3.1 | TSP | 1.2-5 |
| ttgsea | 1.16.0 | TTMap | 1.30.0 |
| TTR | 0.24.4 | ttservice | 0.5.3 |
| TurboNorm | 1.56.0 | tweeDEseq | 1.54.0 |
| tweedie | 2.3.5 | tweenr | 2.0.3 |
| twilight | 1.84.0 | twoddpcr | 1.32.0 |
| TxDb.Celegans.UCSC.ce6.ensGene | 3.2.2 | TxDb.Dmelanogaster.UCSC.dm3.ensGene | 3.2.2 |
| TxDb.Dmelanogaster.UCSC.dm6.ensGene | 3.12.0 | TxDb.Hsapiens.UCSC.hg18.knownGene | 3.2.2 |
| TxDb.Hsapiens.UCSC.hg19.knownGene | 3.2.2 | TxDb.Hsapiens.UCSC.hg38.knownGene | 3.21.0 |
| TxDb.Mmusculus.UCSC.mm10.knownGene | 3.10.0 | TxDb.Mmusculus.UCSC.mm9.knownGene | 3.2.2 |
| TxDb.Rnorvegicus.UCSC.rn4.ensGene | 3.2.2 | txdbmaker | 1.4.2 |
| tximport | 1.36.1 | tximportData | 1.36.0 |
| tzdb | 0.5.0 | UCell | 2.12.0 |
| ucminf | 1.2.2 | UCSC.utils | 1.4.0 |
| umap | 0.2.10.0 | UNDO | 1.50.0 |
| unifiedWMWqPCR | 1.44.0 | UniProt.ws | 2.48.0 |
| uniqtag | 1.0.1 | units | 0.8-7 |
| universalmotif | 1.26.2 | unmarked | 1.5.0 |
| updateObject | 1.12.0 | UpSetR | 1.4.0 |
| urca | 1.3-4 | urlchecker | 1.0.1 |
| urltools | 1.7.3.1 | usethis | 3.2.1 |
| uSORT | 1.34.0 | utf8 | 1.2.6 |
| uuid | 1.2-1 | uwot | 0.2.3 |
| V8 | 7.0.0 | VAM | 1.1.0 |
| varhandle | 2.0.6 | variancePartition | 1.38.1 |
| VariantAnnotation | 1.54.1 | VariantExperiment | 1.22.0 |
| varSelRF | 0.7-8 | vbmp | 1.76.0 |
| vcd | 1.4-13 | vcfR | 1.15.0 |
| vctrs | 0.6.5 | VDJdive | 1.10.0 |
| VegaMC | 3.46.0 | vegan | 2.7-1 |
| velociraptor | 1.18.0 | veloviz | 1.14.0 |
| venn | 1.12 | VennDetail | 1.23.0 |
| VennDiagram | 1.7.3 | VERSO | 1.18.0 |
| VGAM | 1.1-13 | vidger | 1.28.0 |
| vioplot | 0.5.1 | viper | 1.42.0 |
| vipor | 0.4.7 | viridis | 0.6.5 |
| viridisLite | 0.4.2 | visdat | 0.6.0 |
| visNetwork | 2.1.4 | VplotR | 1.18.0 |
| vroom | 1.6.5 | vsclust | 1.10.0 |
| vsn | 3.76.0 | waddR | 1.22.0 |
| waffle | 1.0.2 | waiter | 0.2.5 |
| waldo | 0.6.2 | warp | 0.2.1 |
| waveslim | 1.8.5 | wavethresh | 4.7.3 |
| wdm | 0.2.6 | weaver | 1.74.0 |
| webchem | 1.3.1 | webshot | 0.5.5 |
| webutils | 1.2.2 | weitrix | 1.20.0 |
| wesanderson | 0.3.7 | WGCNA | 1.73 |
| wheatmap | 0.2.0 | whisker | 0.4.1 |
| widgetTools | 1.86.0 | wiggleplotr | 1.32.0 |
| withr | 3.0.2 | wk | 0.9.4 |
| word2vec | 0.4.0 | wordcloud | 2.6 |
| wordcloud2 | 0.2.1 | wpm | 1.18.0 |
| wppi | 1.16.0 | Wrench | 1.26.0 |
| writexl | 1.5.4 | WriteXLS | 6.8.0 |
| wrswoR | 1.1.1 | xcore | 1.12.0 |
| xfun | 0.53 | xgboost | 1.7.11.1 |
| XINA | 1.26.0 | xmapbridge | 1.66.0 |
| XML | 3.99-0.19 | xml2 | 1.4.0 |
| xmlparsedata | 1.0.5 | xopen | 1.0.1 |
| xtable | 1.8-4 | XtraSNPlocs.Hsapiens.dbSNP144.GRCh37 | 0.99.12 |
| xts | 0.14.1 | XVector | 0.48.0 |
| yaImpute | 1.0-34.1 | yaml | 2.3.10 |
| yamss | 1.34.1 | yardstick | 1.3.2 |
| yeastCC | 1.48.0 | yeastExpData | 0.54.0 |
| yesno | 0.1.3 | yulab.utils | 0.2.1 |
| zCompositions | 1.5.0-5 | zeallot | 0.2.0 |
| zellkonverter | 1.18.0 | zFPKM | 1.30.0 |
| zigg | 0.0.2 | zinbwave | 1.30.0 |
| zip | 2.3.3 | zlibbioc | 1.54.0 |
| zoo | 1.8-14 | | |