R: 4.4.3
Added Bioconductor 3.20 packages, and applied security patches.
| package | version | package | version |
|---|
| a4Base | 1.54.0 | a4Classif | 1.54.0 |
| a4Core | 1.54.0 | a4Preproc | 1.54.0 |
| a4Reporting | 1.54.0 | ABarray | 1.74.0 |
| abind | 1.4-8 | abseqR | 1.24.0 |
| ABSSeq | 1.60.0 | acde | 1.36.0 |
| ACE | 1.24.0 | aCGH | 1.84.0 |
| ACME | 2.62.0 | ada | 2.0-5 |
| adabag | 5.0 | ADAM | 1.22.0 |
| additivityTests | 1.1-4.2 | adductData | 1.22.0 |
| ade4 | 1.7-23 | ADGofTest | 0.3 |
| ADImpute | 1.16.0 | admisc | 0.38 |
| adSplit | 1.76.0 | adverSCarial | 1.4.0 |
| AffiXcan | 1.24.0 | affxparser | 1.78.0 |
| affy | 1.84.0 | affycomp | 1.82.0 |
| affyContam | 1.64.0 | affydata | 1.54.0 |
| affyILM | 1.58.0 | affyio | 1.76.0 |
| affylmGUI | 1.80.0 | affyPLM | 1.82.0 |
| AffyRNADegradation | 1.52.0 | AGDEX | 1.54.0 |
| aggregateBioVar | 1.16.0 | aggregation | 1.0.1 |
| agilp | 3.38.0 | agricolae | 1.3-7 |
| AhoCorasickTrie | 0.1.3 | AICcmodavg | 2.3-4 |
| AIMS | 1.38.0 | airway | 1.26.0 |
| akima | 0.6-3.4 | akmbiclust | 0.1.0 |
| alabama | 2023.1.0 | alabaster.base | 1.6.1 |
| alabaster.bumpy | 1.6.0 | alabaster.files | 1.4.0 |
| alabaster.mae | 1.6.0 | alabaster.matrix | 1.6.1 |
| alabaster.ranges | 1.6.0 | alabaster.sce | 1.6.0 |
| alabaster.schemas | 1.6.0 | alabaster.se | 1.6.0 |
| alabaster.spatial | 1.6.1 | alabaster.string | 1.6.0 |
| ALDEx2 | 1.38.0 | alevinQC | 1.22.0 |
| AlgDesign | 1.2.1.2 | ALL | 1.48.0 |
| alluvial | 0.1-2 | AlphaBeta | 1.20.0 |
| AlpsNMR | 4.8.0 | altcdfenvs | 2.68.0 |
| amap | 0.8-20 | AMOUNTAIN | 1.32.0 |
| amplican | 1.28.0 | analogue | 0.18.0 |
| Anaquin | 2.30.0 | ANCOMBC | 2.8.1 |
| AneuFinder | 1.34.0 | AneuFinderData | 1.34.0 |
| ANF | 1.28.0 | animalcules | 1.22.0 |
| animation | 2.7 | annaffy | 1.78.0 |
| anndata | 0.7.5.6 | annmap | 1.48.0 |
| annotate | 1.84.0 | AnnotationDbi | 1.68.0 |
| AnnotationFilter | 1.30.0 | AnnotationForge | 1.48.0 |
| AnnotationHub | 3.14.0 | annotationTools | 1.80.0 |
| anota | 1.54.0 | anota2seq | 1.28.0 |
| antiProfiles | 1.46.0 | AnVIL | 1.18.5 |
| AnVILBase | 1.0.0 | AnVILBilling | 1.16.0 |
| AnVILGCP | 1.0.0 | AnVILPublish | 1.16.0 |
| AnVILWorkflow | 1.6.0 | anytime | 0.3.11 |
| aod | 1.3.3 | aods3 | 0.5 |
| apcluster | 1.4.13 | apComplex | 2.72.0 |
| ape | 5.8-1 | apeglm | 1.28.0 |
| APL | 1.10.2 | aplot | 0.2.5 |
| archive | 1.1.12 | argparse | 2.2.5 |
| aricode | 1.0.3 | arm | 1.14-4 |
| aroma.affymetrix | 3.2.2 | aroma.apd | 0.7.1 |
| aroma.core | 3.3.1 | aroma.light | 3.36.0 |
| ArrayExpress | 1.66.0 | arrayhelpers | 1.1-0 |
| arrayQuality | 1.84.0 | arrayQualityMetrics | 3.62.0 |
| ARRmData | 1.42.0 | ARRmNormalization | 1.46.0 |
| arrow | 20.0.0 | artMS | 1.24.0 |
| arules | 1.7-10 | ASAFE | 1.32.0 |
| ASEB | 1.50.0 | ASGSCA | 1.40.0 |
| ash | 1.0-15 | ashr | 2.2-63 |
| ASICS | 2.22.0 | askpass | 1.2.1 |
| assertthat | 0.2.1 | AssessORF | 1.24.0 |
| ASSET | 2.24.0 | assorthead | 1.0.1 |
| ASURAT | 1.10.0 | atena | 1.12.0 |
| attempt | 0.3.1 | AUCell | 1.28.0 |
| autonomics | 1.14.9 | available | 1.1.0 |
| AWFisher | 1.20.0 | aws | 2.5-6 |
| aws.s3 | 0.3.21 | aws.signature | 0.6.0 |
| awsMethods | 1.1-1 | awst | 1.14.0 |
| b64 | 0.1.5 | BaalChIP | 1.32.0 |
| babelgene | 22.9 | backbone | 2.1.4 |
| backports | 1.5.0 | bacon | 1.34.0 |
| BADER | 1.44.0 | BAGS | 2.46.0 |
| bambu | 3.8.3 | bamlss | 1.2-5 |
| bamsignals | 1.38.0 | BANDITS | 1.22.0 |
| banocc | 1.30.0 | barcodetrackR | 1.14.0 |
| base64 | 2.0.2 | base64enc | 0.1-3 |
| base64url | 1.4 | basecallQC | 1.30.0 |
| baseline | 1.3-5 | BaseSpaceR | 1.50.0 |
| BASiCS | 2.18.0 | BasicSTARRseq | 1.34.0 |
| basilisk | 1.18.0 | basilisk.utils | 1.18.0 |
| batchelor | 1.22.0 | BatchJobs | 1.9 |
| batchtools | 0.9.17 | BayesKnockdown | 1.32.0 |
| bayesm | 3.1-6 | BayesSpace | 1.16.0 |
| bayestestR | 0.15.3 | bayNorm | 1.24.0 |
| baySeq | 2.40.0 | BB | 2019.10-1 |
| BBmisc | 1.13 | bbmle | 1.0.25.1 |
| bbotk | 1.5.0 | bcellViper | 1.42.0 |
| BCRANK | 1.68.0 | bcSeq | 1.28.0 |
| bdsmatrix | 1.3-7 | beachmat | 2.22.0 |
| beachmat.hdf5 | 1.4.0 | beadarray | 2.56.0 |
| BeadDataPackR | 1.58.0 | beanplot | 1.3.1 |
| BEclear | 2.22.0 | BEDASSLE | 1.6.1 |
| beer | 1.10.0 | beeswarm | 0.4.0 |
| bench | 1.1.4 | benchmarkme | 1.0.8 |
| benchmarkmeData | 1.0.4 | bestNormalize | 1.9.1 |
| betareg | 3.2-3 | bezier | 1.1.2 |
| BG2 | 1.6.0 | BgeeDB | 2.32.0 |
| BH | 1.87.0-1 | BiasedUrn | 2.0.12 |
| BiBitR | 0.3.1 | bibtex | 0.5.1 |
| BicARE | 1.64.0 | biclust | 2.0.3.1 |
| BiFET | 1.26.0 | biganalytics | 1.1.22 |
| bigassertr | 0.1.6 | BiGGR | 1.42.0 |
| biglm | 0.9-3 | bigmemory | 4.6.4 |
| bigmemory.sri | 0.1.8 | bigparallelr | 0.3.2 |
| bigrquery | 1.5.1 | bigstatsr | 1.6.1 |
| billboarder | 0.5.0 | binom | 1.1-1.1 |
| binr | 1.1.1 | bioassayR | 1.44.0 |
| Biobase | 2.66.0 | biobroom | 1.38.0 |
| biobtreeR | 1.18.0 | BioCartaImage | 1.4.0 |
| BiocBaseUtils | 1.8.0 | BiocBook | 1.4.0 |
| BiocCheck | 1.42.1 | BiocFHIR | 1.8.0 |
| BiocFileCache | 2.14.0 | BiocGenerics | 0.52.0 |
| biocGraph | 1.68.0 | BiocHubsShiny | 1.6.2 |
| BiocIO | 1.16.0 | BiocManager | 1.30.25 |
| BiocNeighbors | 2.0.1 | BioCor | 1.30.0 |
| BiocParallel | 1.40.2 | BiocPkgTools | 1.24.0 |
| BiocSet | 1.20.0 | BiocSingular | 1.22.0 |
| BiocSklearn | 1.28.0 | BiocStyle | 2.34.0 |
| biocthis | 1.16.0 | BiocVersion | 3.20.0 |
| biocViews | 1.74.0 | BiocWorkflowTools | 1.32.0 |
| biodb | 1.14.0 | biodbChebi | 1.12.0 |
| biodbHmdb | 1.12.0 | biodbNcbi | 1.10.0 |
| biodbNci | 1.10.0 | biodbUniprot | 1.12.0 |
| bioDist | 1.78.0 | biomaRt | 2.62.1 |
| biomartr | 1.0.7 | biomformat | 1.34.0 |
| BioMVCClass | 1.74.0 | BioNet | 1.66.0 |
| BioQC | 1.34.0 | biosigner | 1.34.0 |
| Biostrings | 2.74.1 | biotmle | 1.30.0 |
| BiRewire | 3.38.0 | biscuiteerData | 1.20.0 |
| BiSeq | 1.46.0 | bit | 4.6.0 |
| bit64 | 4.6.0-1 | bitops | 1.0-9 |
| biwt | 1.0.1 | bladderbatch | 1.44.0 |
| BlandAltmanLeh | 0.3.1 | blaster | 1.0.7 |
| blima | 1.40.0 | blme | 1.0-6 |
| blob | 1.2.4 | blockmodeling | 1.1.5 |
| BloodGen3Module | 1.14.0 | bluster | 1.16.0 |
| BMA | 3.18.20 | bmp | 0.3 |
| bnlearn | 5.0.2 | bnstruct | 1.0.15 |
| bookdown | 0.43 | BoolNet | 2.1.9 |
| bootstrap | 2019.6 | BoutrosLab.plotting.general | 7.1.2 |
| BPRMeth | 1.32.0 | BRAIN | 1.52.0 |
| bread | 0.4.1 | breakpointR | 1.24.0 |
| breakpointRdata | 1.24.0 | breastCancerVDX | 1.44.0 |
| brendaDb | 1.20.0 | brew | 1.0-10 |
| brglm | 0.7.2 | BridgeDbR | 2.16.0 |
| brio | 1.1.5 | BRISC | 1.0.6 |
| broom | 1.0.8 | broom.mixed | 0.2.9.6 |
| BrowserViz | 2.28.0 | bs4Dash | 2.3.4 |
| BSDA | 1.2.2 | BSgenome | 1.74.0 |
| BSgenome.Celegans.UCSC.ce2 | 1.4.0 | BSgenome.Drerio.UCSC.danRer7 | 1.4.0 |
| BSgenome.Ecoli.NCBI.20080805 | 1.3.1000 | BSgenome.Hsapiens.1000genomes.hs37d5 | 0.99.1 |
| BSgenome.Hsapiens.NCBI.GRCh38 | 1.3.1000 | BSgenome.Hsapiens.UCSC.hg18 | 1.3.1000 |
| BSgenome.Hsapiens.UCSC.hg19 | 1.4.3 | BSgenome.Hsapiens.UCSC.hg38 | 1.4.5 |
| BSgenome.Mmusculus.UCSC.mm10 | 1.4.3 | BSgenome.Mmusculus.UCSC.mm9 | 1.4.0 |
| BSgenomeForge | 1.6.0 | bsicons | 0.1.2 |
| bslib | 0.9.0 | bsplus | 0.1.5 |
| bsseq | 1.42.0 | BufferedMatrix | 1.70.0 |
| BufferedMatrixMethods | 1.70.0 | bugsigdbr | 1.12.3 |
| BUMHMM | 1.30.0 | bumphunter | 1.48.0 |
| BumpyMatrix | 1.14.0 | BUS | 1.62.0 |
| BUScorrect | 1.24.0 | BUSseq | 1.12.0 |
| butcher | 0.3.5 | BWStest | 0.2.3 |
| C50 | 0.2.0 | ca | 0.71.1 |
| cachem | 1.1.0 | CaDrA | 1.4.0 |
| CAEN | 1.14.0 | Cairo | 1.6-2 |
| calibrate | 1.7.7 | callr | 3.7.6 |
| calm | 1.20.0 | cancerclass | 1.50.0 |
| capushe | 1.1.2 | car | 3.1-3 |
| carData | 3.0-5 | Cardinal | 3.8.3 |
| CardinalIO | 1.4.0 | caret | 7.0-1 |
| CARNIVAL | 2.16.0 | catdata | 1.2.4 |
| Category | 2.72.0 | CatEncoders | 0.1.1 |
| caTools | 1.18.3 | CausalR | 1.38.0 |
| cba | 0.2-25 | CBEA | 1.6.0 |
| cbpManager | 1.14.0 | ccaPP | 0.3.4 |
| ccdata | 1.32.0 | ccfindR | 1.26.0 |
| ccImpute | 1.8.0 | ccmap | 1.32.0 |
| CCP | 1.2 | CCPlotR | 1.4.0 |
| ccrepe | 1.42.0 | ccTensor | 1.0.2 |
| CDFt | 1.2 | CDI | 1.4.0 |
| celaref | 1.24.0 | celda | 1.22.1 |
| celestial | 1.4.6 | CellBarcode | 1.12.0 |
| cellbaseR | 1.30.0 | CellBench | 1.22.0 |
| celldex | 1.16.0 | CelliD | 1.14.0 |
| cellity | 1.34.0 | CellMapper | 1.32.0 |
| CellMixS | 1.22.0 | CellNOptR | 1.52.0 |
| cellranger | 1.1.0 | cellscape | 1.30.0 |
| CellScore | 1.26.0 | CellTrails | 1.24.0 |
| cellxgenedp | 1.10.0 | Cepo | 1.12.0 |
| ceRNAnetsim | 1.18.0 | CFAssay | 1.40.0 |
| cfdnakit | 1.4.0 | cfToolsData | 1.4.0 |
| CGEN | 3.42.0 | CGHbase | 1.66.0 |
| CGHcall | 2.68.0 | CGHnormaliter | 1.60.0 |
| CGHregions | 1.64.0 | ChAMPdata | 2.38.0 |
| changepoint | 2.3 | changepoint.np | 1.0.5 |
| checkmate | 2.3.2 | ChemmineOB | 1.44.0 |
| ChemmineR | 3.58.0 | chemometrics | 1.4.4 |
| CHETAH | 1.22.0 | Chicago | 1.34.0 |
| chihaya | 1.6.0 | chipenrich | 2.30.0 |
| chipenrich.data | 2.30.0 | chipseq | 1.56.0 |
| ChIPseqR | 1.60.0 | ChIPsim | 1.60.0 |
| ChIPXpress | 1.50.0 | ChIPXpressData | 1.44.0 |
| chk | 0.10.0 | chopsticks | 1.72.0 |
| chromDraw | 2.36.0 | ChromHeatMap | 1.60.0 |
| chromhmmData | 0.99.2 | chromPlot | 1.34.0 |
| ChromSCape | 1.16.0 | chromstaR | 1.32.0 |
| chromstaRData | 1.32.0 | chron | 2.3-62 |
| CHRONOS | 1.34.0 | CIMICE | 1.14.0 |
| CINdex | 1.34.0 | circlize | 0.4.16 |
| circular | 0.5-1 | cisPath | 1.46.0 |
| CiteFuse | 1.18.0 | Ckmeans.1d.dp | 4.3.5 |
| classInt | 0.4-11 | cleaver | 1.44.0 |
| clevRvis | 1.6.0 | cli | 3.6.5 |
| clippda | 1.56.0 | clipr | 0.8.0 |
| clisymbols | 1.2.0 | clock | 0.7.3 |
| Clomial | 1.42.0 | clst | 1.54.0 |
| clstutils | 1.54.0 | clue | 0.3-66 |
| clustComp | 1.34.0 | clusterCrit | 1.3.0 |
| ClusterJudge | 1.28.0 | ClusterR | 1.3.3 |
| clusterSeq | 1.30.0 | ClusterSignificance | 1.34.0 |
| clusterStab | 1.78.0 | clustifyr | 1.18.0 |
| ClustIRR | 1.4.0 | clustree | 0.5.1 |
| clustvarsel | 2.3.5 | clv | 0.3-2.4 |
| clValid | 0.7 | CMA | 1.64.0 |
| cMAP | 1.15.1 | cMap2data | 1.42.0 |
| cmapR | 1.18.0 | cmdfun | 1.0.2 |
| cn.farms | 1.54.0 | cn.mops | 1.52.0 |
| CNAnorm | 1.52.0 | CNEr | 1.42.0 |
| CNORdt | 1.48.0 | CNORfeeder | 1.46.0 |
| CNORfuzzy | 1.48.0 | CNORode | 1.48.0 |
| CNTools | 1.62.0 | cnvGSA | 1.50.0 |
| CNVMetrics | 1.10.0 | CNVPanelizer | 1.38.0 |
| CNVRanger | 1.22.0 | cobs | 1.3-9 |
| CoCiteStats | 1.78.0 | coda | 0.19-4.1 |
| CodeDepends | 0.6.6 | codelink | 1.74.0 |
| codingMatrices | 0.4.0 | CoGAPS | 3.26.0 |
| cogena | 1.40.0 | cogeqc | 1.10.0 |
| coGPS | 1.50.0 | coin | 1.4-3 |
| cola | 2.12.0 | collapse | 2.1.1 |
| collections | 0.3.8 | colorRamps | 2.3.4 |
| colorspace | 2.1-1 | colourpicker | 1.3.0 |
| colourvalues | 0.3.9 | combi | 1.18.0 |
| combinat | 0.0-8 | common | 1.1.3 |
| commonmark | 1.9.5 | compareGroups | 4.9.1 |
| COMPASS | 1.44.0 | compcodeR | 1.42.0 |
| ComplexHeatmap | 2.22.0 | ComplexUpset | 1.3.3 |
| compositions | 2.0-8 | CompoundDb | 1.10.0 |
| CompQuadForm | 1.4.3 | ComPrAn | 1.14.0 |
| concaveman | 1.1.0 | conclust | 1.1 |
| concordexR | 1.6.0 | condformat | 0.10.1 |
| CONFESS | 1.34.0 | config | 0.3.2 |
| configr | 0.3.5 | confintr | 1.0.2 |
| conflicted | 1.2.0 | conicfit | 1.0.4 |
| consensus | 1.24.0 | ConsensusClusterPlus | 1.70.0 |
| consensusSeekeR | 1.34.0 | consICA | 2.4.0 |
| ConsRank | 2.1.5 | CONSTANd | 1.14.0 |
| contrast | 0.24.2 | convert | 1.82.0 |
| coop | 0.6-3 | copa | 1.74.0 |
| copula | 1.1-6 | coRdon | 1.24.0 |
| CoreGx | 2.10.0 | Cormotif | 1.52.0 |
| corncob | 0.4.2 | coro | 1.1.0 |
| corpcor | 1.6.10 | corral | 1.16.0 |
| corrgram | 1.14 | corrplot | 0.95 |
| coseq | 1.30.0 | cosmosR | 1.14.0 |
| COSNet | 1.40.0 | COTAN | 2.6.3 |
| countrycode | 1.6.1 | countsimQC | 1.24.0 |
| covEB | 1.32.0 | CoverageView | 1.44.0 |
| covr | 3.6.4 | cowplot | 1.1.3 |
| cplm | 0.7-12.1 | cpp11 | 0.5.2 |
| cqn | 1.52.0 | crayon | 1.5.3 |
| credentials | 2.0.2 | CRImage | 1.54.0 |
| crisprBase | 1.10.0 | crisprBowtie | 1.10.0 |
| crisprBwa | 1.10.0 | crisprScoreData | 1.10.0 |
| CRISPRseek | 1.46.0 | CrispRVariants | 1.34.0 |
| crlmm | 1.64.1 | crmn | 0.0.21 |
| crosstalk | 1.2.1 | crul | 1.5.0 |
| CSAR | 1.58.0 | csaw | 1.40.0 |
| ctc | 1.80.0 | CTDquerier | 2.14.0 |
| cTRAP | 1.24.0 | ctsGE | 1.32.0 |
| CTSV | 1.8.0 | cubature | 2.1.2 |
| Cubist | 0.5.0 | CuratedAtlasQueryR | 1.4.0 |
| curatedTCGAData | 1.28.1 | curl | 6.2.2 |
| customCMPdb | 1.16.0 | cvar | 0.5 |
| cvAUC | 1.1.4 | cvms | 1.7.0 |
| cvTools | 0.3.3 | CVXR | 1.0-15 |
| cycle | 1.60.0 | cydar | 1.30.0 |
| CytoDx | 1.26.0 | cytoKernel | 1.12.0 |
| cytolib | 2.18.2 | cytomapper | 1.18.0 |
| cytoMEM | 1.10.0 | cytometree | 2.0.2 |
| CytoML | 2.18.3 | CytoPipeline | 1.6.0 |
| CytoPipelineGUI | 1.4.0 | cytoviewer | 1.6.0 |
| dada2 | 1.34.0 | daMA | 1.78.0 |
| DART | 1.54.0 | dashboardthemes | 1.1.6 |
| data.table | 1.17.2 | data.tree | 1.1.0 |
| datamods | 1.5.3 | DataVisualizations | 1.3.3 |
| datawizard | 1.1.0 | DBI | 1.2.3 |
| dbplyr | 2.5.0 | dbscan | 1.2.2 |
| dcanr | 1.22.0 | DCATS | 1.4.0 |
| dce | 1.13.0 | dcGSA | 1.34.0 |
| ddCt | 1.62.0 | DDRTree | 0.1.5 |
| dearseq | 1.18.0 | debCAM | 1.24.0 |
| DECIPHER | 3.2.0 | DeconRNASeq | 1.48.0 |
| decontam | 1.26.0 | decoupleR | 2.12.0 |
| DEFormats | 1.34.0 | DEGraph | 1.58.0 |
| DEGreport | 1.42.0 | DEGseq | 1.60.0 |
| Delaporte | 8.4.1 | DelayedArray | 0.32.0 |
| DelayedDataFrame | 1.22.0 | DelayedMatrixStats | 1.28.1 |
| DelayedRandomArray | 1.14.0 | DelayedTensor | 1.12.0 |
| deldir | 2.0-4 | DELocal | 1.6.0 |
| deltaCaptureC | 1.20.0 | deltaGseg | 1.46.0 |
| DeMAND | 1.36.0 | demuxmix | 1.8.0 |
| dendextend | 1.19.0 | densEstBayes | 1.0-2.2 |
| densvis | 1.16.0 | DEoptimR | 1.1-3-1 |
| DepecheR | 1.22.0 | DepInfeR | 1.10.0 |
| depmap | 1.20.0 | depmixS4 | 1.5-1 |
| DEqMS | 1.24.0 | derfinderHelper | 1.40.0 |
| Deriv | 4.1.6 | desc | 1.4.3 |
| DescTools | 0.99.60 | DESeq2 | 1.46.0 |
| DEsingle | 1.26.0 | deSolve | 1.40 |
| DEsubs | 1.32.0 | detectseparation | 0.3 |
| devtools | 2.4.5 | DEWSeq | 1.20.0 |
| DExMAdata | 1.14.0 | DEXSeq | 1.52.0 |
| DFP | 1.64.0 | dgof | 1.5.1 |
| diagram | 1.6.5 | DiagrammeR | 1.0.11 |
| diceR | 3.0.0 | dichromat | 2.0-0.1 |
| diffcoexp | 1.26.0 | DiffCorr | 0.4.4 |
| DifferentialRegulation | 2.4.0 | diffGeneAnalysis | 1.88.0 |
| diffHic | 1.38.0 | DiffLogo | 2.30.0 |
| diffobj | 0.3.6 | diffuStats | 1.26.0 |
| digest | 0.6.37 | diggit | 1.38.0 |
| diptest | 0.77-1 | dir.expiry | 1.14.0 |
| directlabels | 2024.1.21 | Director | 1.32.0 |
| directPA | 1.5.1 | DirichletMultinomial | 1.48.0 |
| DirichletReg | 0.7-1 | dirmult | 0.1.3-5 |
| discordant | 1.30.0 | DiscoRhythm | 1.22.0 |
| distances | 0.1.12 | distillery | 1.2-2 |
| distinct | 1.18.0 | distr | 2.9.7 |
| distributional | 0.5.0 | distributions3 | 0.2.2 |
| dittoSeq | 1.18.0 | divergence | 1.22.0 |
| dixonTest | 1.0.4 | dks | 1.52.0 |
| DMCFB | 1.20.0 | DMCHMM | 1.28.0 |
| dml | 1.1.0 | DMRcaller | 1.38.0 |
| DMRScan | 1.28.0 | DMwR2 | 0.0.2 |
| DNABarcodeCompatibility | 1.22.0 | DNABarcodes | 1.36.0 |
| DNAcopy | 1.80.0 | DNAshapeR | 1.34.0 |
| dnet | 1.1.7 | doBy | 4.6.27 |
| docopt | 0.7.2 | doMC | 1.3.8 |
| doParallel | 1.0.17 | doRNG | 1.8.6.2 |
| dorothea | 1.18.0 | DOSE | 4.0.1 |
| doseR | 1.22.0 | doSNOW | 1.0.20 |
| dotCall64 | 1.2 | downlit | 0.4.4 |
| downloader | 0.4.1 | downloadthis | 0.4.1 |
| dplyr | 1.1.4 | dqrng | 0.4.1 |
| drawer | 0.2.0.1 | drawProteins | 1.26.0 |
| DrImpute | 1.0 | DRIMSeq | 1.34.0 |
| DriverNet | 1.46.0 | DropletUtils | 1.26.0 |
| drtmle | 1.1.2 | DrugVsDisease | 2.48.0 |
| DrugVsDiseasedata | 1.42.0 | dStruct | 1.12.0 |
| DT | 0.33 | DTA | 2.52.0 |
| dtangle | 2.0.9 | dtplyr | 1.3.1 |
| dtt | 0.1-2 | dtw | 1.23-1 |
| duckdb | 1.2.2 | Dune | 1.18.0 |
| dunn.test | 1.3.6 | dupRadar | 1.36.0 |
| dyebias | 1.66.0 | dynamicTreeCut | 1.63-1 |
| DynDoc | 1.84.0 | e1071 | 1.7-16 |
| earth | 5.3.4 | easierData | 1.12.0 |
| easylift | 1.4.0 | easyPubMed | 2.13 |
| easyreporting | 1.18.0 | easyRNASeq | 2.42.0 |
| EBarrays | 2.70.0 | EBcoexpress | 1.50.0 |
| EBImage | 4.48.0 | EBSEA | 1.34.0 |
| EBSeq | 2.4.1 | echarts4r | 0.4.5 |
| ecolitk | 1.78.0 | ECOSolveR | 0.5.5 |
| ecp | 3.1.6 | Ecume | 0.9.2 |
| EDASeq | 2.40.0 | edgeR | 4.4.2 |
| EDIRquery | 1.6.0 | eds | 1.8.0 |
| effsize | 0.8.1 | EGAD | 1.34.0 |
| egg | 0.4.5 | EGSEAdata | 1.34.0 |
| einsum | 0.1.2 | eiR | 1.46.0 |
| eisaR | 1.18.0 | elasticnet | 1.3 |
| elitism | 1.1.1 | ellipse | 0.5.0 |
| ellipsis | 0.3.2 | ELMER.data | 2.30.0 |
| emdbook | 1.3.13 | emdist | 0.3-3 |
| EMDomics | 2.36.0 | emmeans | 1.11.1 |
| EmpiricalBrownsMethod | 1.34.0 | energy | 1.7-12 |
| english | 1.2-6 | EnhancedVolcano | 1.24.0 |
| EnMCB | 1.18.0 | EnrichedHeatmap | 1.36.0 |
| EnrichmentBrowser | 2.36.0 | enrichR | 3.4 |
| ensembldb | 2.30.0 | entropy | 1.3.2 |
| enviPat | 2.6 | EnvStats | 3.1.0 |
| epialleleR | 1.14.0 | EpiDISH | 2.22.0 |
| epigenomix | 1.46.0 | EpiMix.data | 1.8.0 |
| epimutacionsData | 1.10.0 | epiNEM | 1.30.0 |
| epiR | 2.0.83 | epistack | 1.12.0 |
| epistasisGA | 1.8.0 | epivizrServer | 1.34.0 |
| erccdashboard | 1.40.0 | ERSSA | 1.24.0 |
| escheR | 1.6.0 | esetVis | 1.32.0 |
| estimability | 1.5.1 | etrunct | 0.1 |
| eudysbiome | 1.36.0 | eulerr | 7.0.2 |
| eva | 0.2.6 | evaluate | 1.0.3 |
| evaluomeR | 1.22.0 | evd | 2.3-7.1 |
| evmix | 2.12 | ewceData | 1.14.0 |
| Exact | 3.3 | exactRankTests | 0.8-35 |
| excelR | 0.4.0 | ExCluster | 1.24.0 |
| ExiMiR | 2.48.0 | ExperimentHub | 2.14.0 |
| ExperimentSubset | 1.16.0 | ExploreModelMatrix | 1.18.0 |
| expm | 1.0-0 | ExpressionAtlas | 1.34.0 |
| ExtDist | 0.7-2 | extraDistr | 1.10.0 |
| extrafont | 0.19 | extrafontdb | 1.0 |
| extRemes | 2.2-1 | EZtune | 3.1.1 |
| fabia | 2.52.0 | fabricatr | 1.0.2 |
| factDesign | 1.82.0 | FamAgg | 1.34.0 |
| fANCOVA | 0.6-1 | fansi | 1.0.6 |
| farver | 2.1.2 | fastcluster | 1.3.0 |
| fastDummies | 1.7.5 | fastICA | 1.2-7 |
| fastmap | 1.2.0 | fastmatch | 1.1-6 |
| FastqCleaner | 1.24.0 | fastreeR | 1.10.0 |
| fastseg | 1.52.0 | fauxpas | 0.5.2 |
| fBasics | 4041.97 | fCI | 1.36.0 |
| FCPS | 1.3.4 | fda | 6.2.0 |
| fdrame | 1.78.0 | fdrtool | 1.2.18 |
| fds | 1.8 | FEAST | 1.14.0 |
| FeatSeekR | 1.6.0 | feature | 1.2.15 |
| fedup | 1.14.0 | FELLA | 1.26.0 |
| fenr | 1.4.2 | ff | 4.5.2 |
| fftw | 1.0-9 | fftwtools | 0.9-11 |
| fGarch | 4033.92 | fgga | 1.14.0 |
| FGNet | 3.40.0 | fgsea | 1.32.4 |
| fields | 16.3.1 | filelock | 1.0.3 |
| filematrix | 1.3 | fillpattern | 1.0.2 |
| FilterFFPE | 1.16.0 | findpython | 1.0.9 |
| fingerprint | 3.5.7 | FIs | 1.34.0 |
| FISHalyseR | 1.40.0 | fishpond | 2.12.0 |
| fission | 1.26.0 | fit.models | 0.64 |
| fitdistrplus | 1.2-2 | FitHiC | 1.32.0 |
| flashClust | 1.01-2 | flatxml | 0.1.1 |
| flexclust | 1.5.0 | flexdashboard | 0.6.2 |
| flexmix | 2.3-20 | FlexParamCurve | 1.5-6 |
| flextable | 0.9.7 | float | 0.3-3 |
| flock | 0.7 | flowAI | 1.36.0 |
| flowBeads | 1.44.0 | flowBin | 1.42.0 |
| flowcatchR | 1.40.0 | flowCHIC | 1.40.0 |
| flowClean | 1.44.0 | flowClust | 3.44.0 |
| flowCore | 2.18.0 | flowCyBar | 1.42.0 |
| flowFP | 1.64.0 | flowGate | 1.6.0 |
| flowGraph | 1.14.0 | flowMatch | 1.42.0 |
| flowMeans | 1.66.0 | flowMerge | 2.54.0 |
| flowPeaks | 1.52.0 | flowPlots | 1.54.0 |
| flowSpecs | 1.20.0 | flowStats | 4.18.0 |
| flowTime | 1.30.0 | flowTrans | 1.58.0 |
| flowViz | 1.70.0 | flowVS | 1.38.0 |
| flowWorkspace | 4.18.1 | fmcsR | 1.48.0 |
| FME | 1.3.6.3 | fmrs | 1.16.0 |
| fmsb | 0.7.6 | FMStable | 0.1-4 |
| FNN | 1.1.4.1 | fobitools | 1.14.0 |
| fontawesome | 0.5.3 | fontBitstreamVera | 0.1.1 |
| fontLiberation | 0.1.0 | fontquiver | 0.2.1 |
| forcats | 1.0.0 | foreach | 1.5.2 |
| forecast | 8.24.0 | forestplot | 3.1.6 |
| formatR | 1.14 | formattable | 0.2.1 |
| Formula | 1.2-5 | formula.tools | 1.7.1 |
| fpc | 2.2-13 | fracdiff | 1.5-3 |
| fractional | 0.1.3 | fresh | 0.2.1 |
| FRGEpistasis | 1.42.0 | frma | 1.58.0 |
| frmaTools | 1.58.0 | fs | 1.6.6 |
| FSelector | 0.34 | fst | 0.9.8 |
| fstcore | 0.10.0 | furrr | 0.3.1 |
| futile.logger | 1.4.3 | futile.options | 1.0.1 |
| future | 1.49.0 | future.apply | 1.11.3 |
| fuzzyjoin | 0.1.6 | GA | 3.2.4 |
| gaga | 2.52.0 | gage | 2.56.0 |
| gam | 1.22-5 | gamlss | 5.4-22 |
| gamlss.data | 6.0-6 | gamlss.dist | 6.1-1 |
| gap | 1.6 | gap.datasets | 0.0.6 |
| GAprediction | 1.32.0 | garfield | 1.34.0 |
| gargle | 1.5.2 | GateFinder | 1.26.0 |
| gatom | 1.4.0 | gbm | 2.2.2 |
| GBScleanR | 2.0.3 | gbutils | 0.5 |
| gcatest | 2.6.0 | gclus | 1.3.3 |
| gCrisprTools | 2.12.0 | gcrma | 2.78.0 |
| gcspikelite | 1.44.0 | gdata | 3.0.1 |
| gDRstyle | 1.4.3 | GDSArray | 1.26.0 |
| gdsfmt | 1.42.1 | gdtools | 0.4.2 |
| geeM | 0.10.1 | geepack | 1.3.12 |
| geigen | 2.3 | GEM | 1.32.0 |
| gemini | 1.20.0 | gemma.R | 3.2.1 |
| genalg | 0.2.1 | genArise | 1.82.0 |
| GeneBreak | 1.36.0 | geneClassifiers | 1.30.0 |
| GeneExpressionSignature | 1.52.0 | genefilter | 1.88.0 |
| GeneGA | 1.56.0 | GeneMeta | 1.78.0 |
| GeneNet | 1.2.17 | GeneNetworkBuilder | 1.48.0 |
| GeneOverlap | 1.42.0 | geneplast | 1.32.0 |
| geneplotter | 1.84.0 | geneRecommender | 1.78.0 |
| GeneRegionScan | 1.62.0 | generics | 0.1.4 |
| geneRxCluster | 1.42.0 | GeneSelectMMD | 2.50.0 |
| geNetClassifier | 1.46.0 | genetics | 1.3.8.1.3 |
| GeneticsPed | 1.68.0 | geneXtendeR | 1.32.0 |
| GENIE3 | 1.28.0 | genieclust | 1.1.6 |
| genlasso | 1.6.1 | GENLIB | 1.1.10 |
| genoCN | 1.58.0 | genomation | 1.38.0 |
| GenomAutomorphism | 1.8.1 | GenomeInfoDb | 1.42.3 |
| GenomeInfoDbData | 1.2.13 | genomeIntervals | 1.62.0 |
| genomes | 3.36.0 | GenomicAlignments | 1.42.0 |
| GenomicDataCommons | 1.30.1 | GenomicDistributions | 1.14.0 |
| GenomicFeatures | 1.58.0 | genomicInstability | 1.12.0 |
| GenomicRanges | 1.58.0 | GenomicScores | 2.18.1 |
| GenomicTools.fileHandler | 0.1.5.9 | GenomicTuples | 1.40.0 |
| GenSA | 1.1.14.1 | GeoDiff | 1.12.0 |
| GEOfastq | 1.14.0 | GEOmetadb | 1.68.1 |
| geometries | 0.2.4 | geometry | 0.5.2 |
| GeomxTools | 3.10.0 | GEOquery | 2.74.0 |
| geosphere | 1.5-20 | GEOsubmission | 1.58.0 |
| GeoTcgaData | 2.6.0 | gert | 2.1.5 |
| getDEE2 | 1.16.2 | getopt | 1.20.4 |
| GetoptLong | 1.0.5 | geva | 1.14.0 |
| GFA | 1.0.5 | gg4way | 1.4.0 |
| ggalluvial | 0.12.5 | GGally | 2.2.1 |
| ggalt | 0.4.0 | gganimate | 1.0.9 |
| ggbeeswarm | 0.7.2 | ggbump | 0.1.0 |
| ggcorrplot | 0.1.4.1 | ggcyto | 1.34.0 |
| ggdendro | 0.2.0 | ggdist | 3.3.3 |
| ggExtra | 0.10.1 | ggfittext | 0.10.2 |
| ggforce | 0.4.2 | ggformula | 0.12.0 |
| ggfortify | 0.4.17 | ggfun | 0.1.8 |
| gggenes | 0.5.1 | ggh4x | 0.3.0 |
| ggimage | 0.3.3 | ggiraph | 0.8.13 |
| ggkegg | 1.4.1 | ggm | 2.5.1 |
| ggmanh | 1.10.0 | ggmcmc | 1.5.1.1 |
| ggmsa | 1.12.0 | ggnetwork | 0.5.13 |
| ggnewscale | 0.5.1 | GGPA | 1.18.0 |
| ggplot.multistats | 1.0.1 | ggplot2 | 3.5.2 |
| ggplotify | 0.1.2 | ggpmisc | 0.6.1 |
| ggpointdensity | 0.2.0 | ggpp | 0.5.8-1 |
| ggraph | 2.2.1 | ggrastr | 1.0.2 |
| ggrepel | 0.9.6 | ggridges | 0.5.6 |
| ggsc | 1.4.0 | ggsci | 3.2.0 |
| ggseqlogo | 0.2 | ggside | 0.3.1 |
| ggsignif | 0.6.4 | ggspavis | 1.12.0 |
| ggstar | 1.0.4 | ggstats | 0.9.0 |
| ggtangle | 0.0.6 | ggtext | 0.1.2 |
| ggthemes | 5.1.0 | ggtree | 3.14.0 |
| ggtreeDendro | 1.8.0 | ggtreeExtra | 1.16.0 |
| ggupset | 0.4.1 | ggvenn | 0.1.10 |
| ggvis | 0.4.9 | ggwordcloud | 0.6.2 |
| gh | 1.4.1 | GIGSEA | 1.24.0 |
| girafe | 1.58.0 | gistr | 0.9.0 |
| git2r | 0.36.2 | gitcreds | 0.1.2 |
| GLAD | 2.70.0 | GladiaTOX | 1.22.0 |
| glasso | 1.11 | gld | 2.6.7 |
| Glimma | 2.16.0 | glm2 | 1.2.1 |
| glmGamPoi | 1.18.0 | glmmTMB | 1.1.11 |
| glmnet | 4.1-8 | glmpca | 0.2.0 |
| GlobalAncova | 4.24.0 | GlobalOptions | 0.1.2 |
| globals | 0.18.0 | globalSeq | 1.34.0 |
| globaltest | 5.60.0 | GloScope | 1.4.0 |
| glue | 1.8.0 | gmm | 1.8 |
| gmodels | 2.19.1 | gmp | 0.7-5 |
| GMRP | 1.34.0 | GNET2 | 1.22.0 |
| gnm | 1.1-5 | GO.db | 3.20.0 |
| GOexpress | 1.40.0 | GoFKernel | 2.1-3 |
| goftest | 1.2-3 | GOfuncR | 1.26.0 |
| golem | 0.5.1 | googleAuthR | 2.0.2 |
| googledrive | 2.1.1 | googlesheets4 | 1.1.1 |
| googleVis | 0.7.3 | GOpro | 1.32.0 |
| goProfiles | 1.68.0 | GOSemSim | 2.32.0 |
| goSTAG | 1.30.0 | GOTHiC | 1.42.0 |
| goTools | 1.80.0 | gower | 1.0.2 |
| GPA | 1.18.0 | GPArotation | 2025.3-1 |
| gplots | 3.2.0 | gpls | 1.78.0 |
| gprofiler2 | 0.2.3 | gpuMagic | 1.22.0 |
| gRain | 1.4.5 | granulator | 1.14.0 |
| graph | 1.84.1 | GraphAlignment | 1.70.0 |
| GraphAT | 1.78.0 | graphite | 1.52.0 |
| graphlayouts | 1.2.2 | gRbase | 2.0.3 |
| GRENITS | 1.58.0 | GreyListChIP | 1.38.0 |
| gridBase | 0.4-7 | gridExtra | 2.3 |
| gridGraphics | 0.5-1 | gridSVG | 1.7-5 |
| gridtext | 0.1.5 | grImport | 0.9-7 |
| groHMM | 1.40.3 | groupdata2 | 2.0.5 |
| grr | 0.9.5 | GSA | 1.03.3 |
| GSALightning | 1.34.0 | GSAR | 1.40.0 |
| GSCA | 2.36.0 | gscreend | 1.20.0 |
| GSEABase | 1.68.0 | GSEAlm | 1.66.0 |
| GSEAmining | 1.16.0 | GSgalgoR | 1.16.0 |
| gsignal | 0.3-7 | gsl | 2.1-8 |
| gsmoothr | 0.1.7 | gson | 0.1.0 |
| gss | 2.2-9 | gstat | 2.1-3 |
| gsubfn | 0.7 | GSVA | 2.0.7 |
| GSVAdata | 1.42.0 | gtable | 0.3.6 |
| gtools | 3.9.5 | gtrellis | 1.38.0 |
| Guitar | 2.22.0 | GUniFrac | 1.8 |
| GWAS.BAYES | 1.16.0 | GWASExactHW | 1.2 |
| GWASTools | 1.52.0 | GWENA | 1.16.0 |
| gypsum | 1.2.0 | h5vc | 2.40.1 |
| h5vcData | 2.26.0 | hapFabia | 1.48.0 |
| hardhat | 1.4.1 | HardyWeinberg | 1.7.8 |
| Harman | 1.34.0 | harmonicmeanp | 3.0.1 |
| harmony | 1.2.3 | Harshlight | 1.78.0 |
| hash | 2.2.6.3 | haven | 2.5.4 |
| hca | 1.14.1 | HDCI | 1.0-2 |
| HDF5Array | 1.34.0 | HDInterval | 0.2.4 |
| hdrcde | 3.4 | HDTD | 1.40.0 |
| heatmap3 | 1.1.9 | heatmaply | 1.5.0 |
| heatmaps | 1.30.0 | Heatplus | 3.14.0 |
| HELP | 1.64.0 | HEM | 1.78.0 |
| here | 1.0.1 | hermes | 1.10.0 |
| HERON | 1.4.0 | Herper | 1.16.0 |
| hexbin | 1.28.5 | HGC | 1.14.0 |
| HGNChelper | 0.8.15 | hgu133a.db | 3.13.0 |
| hgu133a2.db | 3.13.0 | hgu133plus2.db | 3.13.0 |
| hgu95a.db | 3.13.0 | hgu95av2.db | 3.13.0 |
| hiAnnotator | 1.40.0 | HIBAG | 1.42.0 |
| HiCBricks | 1.24.0 | HiCcompare | 1.28.0 |
| HiCDOC | 1.8.0 | HiCExperiment | 1.6.0 |
| HiContacts | 1.8.0 | HiCool | 1.6.0 |
| hicVennDiagram | 1.4.0 | HiddenMarkov | 1.8-14 |
| hierGWAS | 1.36.0 | hierinf | 1.24.0 |
| highcharter | 0.9.4 | highr | 0.11 |
| HilbertCurve | 2.0.0 | HilbertVis | 1.64.0 |
| HilbertVisGUI | 1.64.0 | HIPPO | 1.18.0 |
| HIREewas | 1.24.0 | HiTC | 1.50.0 |
| HiveR | 0.4.0 | hmdbQuery | 1.26.0 |
| Hmisc | 5.2-3 | HMMcopy | 1.48.0 |
| hms | 1.1.3 | homologene | 1.4.68.19.3.27 |
| hoodscanR | 1.4.0 | hopach | 2.66.0 |
| HPAanalyze | 1.24.0 | hpar | 1.48.0 |
| HPiP | 1.12.0 | hrbrthemes | 0.8.7 |
| HSMMSingleCell | 1.26.0 | htm2txt | 2.2.2 |
| htmlTable | 2.4.3 | htmltools | 0.5.8.1 |
| HTMLUtils | 0.1.9 | htmlwidgets | 1.6.4 |
| HTqPCR | 1.60.1 | HTSCluster | 2.0.11 |
| HTSFilter | 1.46.0 | httpcache | 1.2.0 |
| httpcode | 0.3.0 | httpuv | 1.6.16 |
| httr | 1.4.7 | httr2 | 1.1.2 |
| HubPub | 1.14.1 | huge | 1.3.5 |
| hummingbird | 1.16.0 | hunspell | 3.0.6 |
| hwriter | 1.3.2.1 | HybridMTest | 1.50.0 |
| hyperdraw | 1.58.0 | hypergraph | 1.78.0 |
| iASeq | 1.50.0 | iasva | 1.24.0 |
| iBBiG | 1.50.0 | ibh | 1.54.0 |
| iBMQ | 1.46.0 | ica | 1.0-3 |
| iCARE | 1.34.0 | Icens | 1.78.0 |
| iChip | 1.60.0 | iClusterPlus | 1.42.0 |
| iCOBRA | 1.34.0 | ICS | 1.4-2 |
| ICSNP | 1.1-2 | IdeoViz | 1.42.0 |
| idiogram | 1.82.0 | IDPmisc | 1.1.21 |
| idpr | 1.16.0 | idr | 1.3 |
| idr2d | 1.20.0 | ids | 1.0.1 |
| IFAA | 1.8.0 | iGC | 1.36.0 |
| IgGeneUsage | 1.20.0 | igraph | 2.1.4 |
| IHW | 1.34.0 | Illumina450ProbeVariants.db | 1.42.0 |
| illuminaio | 0.48.0 | ILoReg | 1.16.0 |
| imager | 1.0.3 | imcRtools | 1.12.0 |
| IMMAN | 1.26.0 | immunoClust | 1.38.0 |
| immunotation | 1.14.0 | IMPCdata | 1.42.0 |
| import | 1.3.2 | impute | 1.80.0 |
| imputeLCMD | 2.1 | inaparc | 1.2.0 |
| INDEED | 2.20.0 | ineq | 0.2-13 |
| iNEXT | 3.0.1 | infercnv | 1.22.0 |
| infinityFlow | 1.16.0 | Informeasure | 1.16.0 |
| infotheo | 1.2.0.1 | ini | 0.3.1 |
| inline | 0.3.21 | INPower | 1.42.0 |
| insight | 1.2.0 | instantiate | 0.2.3 |
| INTACT | 1.6.0 | interacCircos | 1.16.0 |
| InteractionSet | 1.34.0 | InteractiveComplexHeatmap | 1.14.0 |
| interactiveDisplayBase | 1.44.0 | intergraph | 2.0-4 |
| interp | 1.1-6 | intervals | 0.15.5 |
| IntramiRExploreR | 1.28.0 | intrinsicDimension | 1.2.0 |
| inum | 1.0-5 | InvariantCausalPrediction | 0.8 |
| invgamma | 1.1 | IONiseR | 2.30.0 |
| ipdDb | 1.24.0 | ipred | 0.9-15 |
| IRanges | 2.40.1 | IRdisplay | 1.1 |
| IRkernel | 1.3.2 | irlba | 2.3.5.1 |
| irr | 0.84.1 | isa2 | 0.3.6 |
| ISAnalytics | 1.16.1 | iSEE | 2.18.0 |
| iSEEde | 1.4.0 | iSEEhex | 1.8.0 |
| iSEEhub | 1.8.0 | iSEEindex | 1.4.0 |
| iSEEpathways | 1.4.0 | iSEEu | 1.18.0 |
| iSeq | 1.58.0 | ISLET | 1.8.0 |
| isoband | 0.2.7 | isobar | 1.52.0 |
| IsoBayes | 1.4.0 | ISOcodes | 2025.05.18 |
| IsoCorrectoR | 1.24.0 | IsoCorrectoRGUI | 1.22.0 |
| ISoLDE | 1.34.0 | isomiRs | 1.34.0 |
| isotree | 0.6.1-4 | isva | 1.9 |
| ITALICS | 2.66.0 | ITALICSData | 2.44.0 |
| iterativeBMA | 1.64.0 | iterativeBMAsurv | 1.64.0 |
| iterators | 1.0.14 | itertools | 0.1-3 |
| IVAS | 2.26.0 | IWTomics | 1.30.0 |
| JADE | 2.0-4 | janeaustenr | 1.0.0 |
| janitor | 2.2.1 | JASPAR2018 | 1.1.1 |
| JASPAR2024 | 0.99.6 | jomo | 2.7-6 |
| jpeg | 0.1-11 | jquerylib | 0.1.4 |
| jsonlite | 2.0.0 | jsonvalidate | 1.5.0 |
| kableExtra | 1.4.0 | KBoost | 1.14.0 |
| KCsmart | 2.64.0 | kde1d | 1.1.0 |
| kebabs | 1.40.0 | KEGGandMetacoreDzPathwaysGEO | 1.26.0 |
| KEGGdzPathwaysGEO | 1.44.0 | KEGGgraph | 1.66.0 |
| keggorthology | 2.58.0 | KEGGREST | 1.46.0 |
| Kendall | 2.2.1 | keras | 2.15.0 |
| KernelKnn | 1.1.5 | kernlab | 0.9-33 |
| kinship2 | 1.9.6.1 | KinSwingR | 1.24.0 |
| klaR | 1.7-3 | km.ci | 0.5-6 |
| kmer | 1.1.2 | KMsurv | 0.1-5 |
| knitr | 1.50 | knitrBootstrap | 1.0.3 |
| knn.covertree | 1.0 | knnmi | 1.0 |
| KOdata | 1.32.0 | kohonen | 3.0.12 |
| koRpus | 0.13-8 | koRpus.lang.en | 0.1-4 |
| kpeaks | 1.1.0 | kriging | 1.2 |
| ks | 1.15.1 | kSamples | 1.2-10 |
| labeling | 0.4.3 | labelled | 2.14.1 |
| LACE | 2.10.0 | laeken | 0.5.3 |
| lambda.r | 1.2.4 | LambertW | 0.6.9-1 |
| lamW | 2.2.4 | LaplacesDemon | 16.1.6 |
| lapmix | 1.72.0 | lars | 1.3 |
| later | 1.4.2 | latex2exp | 0.9.6 |
| latticeExtra | 0.6-30 | lava | 1.8.1 |
| lavaan | 0.6-19 | lazyeval | 0.2.2 |
| LBE | 1.74.0 | lbfgs | 1.2.1.2 |
| ldblock | 1.36.0 | LEA | 3.18.0 |
| leaps | 3.2 | LearnBayes | 2.15.1 |
| learnr | 0.11.5 | LedPred | 1.40.0 |
| lefser | 1.16.2 | leidenbase | 0.1.35 |
| lemur | 1.4.0 | les | 1.56.0 |
| levi | 1.24.0 | lexicon | 1.2.1 |
| lfa | 2.6.0 | lfda | 1.1.3 |
| lgr | 0.4.4 | lhs | 1.2.0 |
| libcoin | 1.0-10 | LiblineaR | 2.10-24 |
| lifecycle | 1.0.4 | LIM | 1.4.7.2 |
| limma | 3.62.2 | limmaGUI | 1.82.0 |
| limSolve | 1.5.7.2 | linkcomm | 1.0-14 |
| Linnorm | 2.30.0 | linprog | 0.9-4 |
| LinTInd | 1.10.0 | lintr | 3.2.0 |
| lionessR | 1.20.0 | lipidr | 2.20.0 |
| LiquidAssociation | 1.60.0 | listenv | 0.9.1 |
| listviewer | 4.0.0 | litedown | 0.7 |
| lmdme | 1.48.0 | lme4 | 1.1-37 |
| lmerTest | 3.1-3 | lmodel2 | 1.7-4 |
| lmom | 3.2 | Lmoments | 1.3-1 |
| lmtest | 0.9-40 | lobstr | 1.1.2 |
| locfdr | 1.1-8 | locfit | 1.5-9.12 |
| loci2path | 1.26.0 | log4r | 0.4.4 |
| logger | 0.4.0 | logging | 0.10-108 |
| logicFS | 2.26.0 | LogicReg | 1.6.6 |
| logistf | 1.26.1 | logitnorm | 0.8.39 |
| logNormReg | 0.5-0 | logr | 1.3.9 |
| lokern | 1.1-12 | LOLA | 1.36.0 |
| longitudinal | 1.1.13 | loo | 2.8.0 |
| LoomExperiment | 1.24.0 | LPE | 1.80.0 |
| lpNet | 2.38.0 | lpSolve | 5.6.23 |
| lpSolveAPI | 5.5.2.0-17.14 | lpsymphony | 1.34.0 |
| LRBaseDbi | 2.16.0 | LRcell | 1.14.0 |
| lsa | 0.73.3 | LSD | 4.1-0 |
| lsr | 0.5.2 | lubridate | 1.9.4 |
| lumiHumanAll.db | 1.22.0 | LungCancerACvsSCCGEO | 1.42.0 |
| lwgeom | 0.2-14 | LymphoSeq | 1.34.0 |
| LymphoSeqDB | 0.99.2 | M3C | 1.28.0 |
| M3Drop | 1.32.0 | maCorrPlot | 1.76.0 |
| MACSQuantifyR | 1.20.0 | MACSr | 1.14.0 |
| made4 | 1.80.0 | MafDb.1Kgenomes.phase3.hs37d5 | 3.10.0 |
| MafDb.ExAC.r1.0.hs37d5 | 3.10.0 | MafDb.gnomADex.r2.1.hs37d5 | 3.10.0 |
| maftools | 2.22.0 | magic | 1.6-1 |
| magicaxis | 2.4.5 | magick | 2.8.6 |
| magrene | 1.8.0 | magrittr | 2.0.3 |
| MAI | 1.12.0 | makecdfenv | 1.82.0 |
| MALDIquant | 1.22.3 | MANOR | 1.78.0 |
| MantelCorr | 1.76.0 | mapplots | 1.5.2 |
| mapproj | 1.2.11 | maps | 3.4.2.1 |
| mapscape | 1.30.0 | maptree | 1.4-8 |
| markdown | 2.0 | marr | 1.16.0 |
| marray | 1.84.0 | martini | 1.26.0 |
| mashr | 0.2.79 | maSigPro | 1.78.0 |
| maskBAD | 1.50.0 | MassArray | 1.58.0 |
| massiR | 1.42.0 | MassSpecWavelet | 1.72.1 |
| MAST | 1.32.0 | matchBox | 1.48.0 |
| matchingR | 1.3.3 | mathjaxr | 1.8-0 |
| matlab | 1.0.4.1 | matrixcalc | 1.0-6 |
| MatrixCorrelation | 0.10.0 | MatrixEQTL | 2.3 |
| MatrixExtra | 0.1.15 | MatrixGenerics | 1.18.1 |
| MatrixModels | 0.5-4 | matrixStats | 1.5.0 |
| matrixTests | 0.2.3 | matter | 2.8.0 |
| maxLik | 1.5-2.1 | maxstat | 0.7-26 |
| MBA | 0.1-2 | MBAmethyl | 1.40.0 |
| MBASED | 1.40.0 | MBCB | 1.60.0 |
| mbest | 0.6.1 | mbkmeans | 1.22.0 |
| mboost | 2.9-11 | MBQN | 2.18.0 |
| mbQTL | 1.6.0 | MBttest | 1.34.0 |
| mcbiopi | 1.1.6 | MCL | 1.0 |
| mclust | 6.1.1 | mclustcomp | 0.3.3 |
| mcmc | 0.9-8 | MCMCglmm | 2.36 |
| MCMCpack | 1.7-1 | MCMCprecision | 0.4.0 |
| mco | 1.17 | mcr | 1.3.3.1 |
| mCSEAdata | 1.26.1 | mdp | 1.26.0 |
| mdqc | 1.68.0 | MDTS | 1.26.0 |
| MeasurementError.cor | 1.78.0 | mediation | 4.5.0 |
| MEDIPS | 1.58.0 | mefa | 3.2-9 |
| megadepth | 1.16.0 | MEIGOR | 1.40.0 |
| Melissa | 1.22.0 | memes | 1.14.0 |
| memoise | 2.0.1 | memuse | 4.2-3 |
| Mergeomics | 1.34.0 | MeSHDbi | 1.42.0 |
| MesKit | 1.16.0 | MESS | 0.5.12 |
| messina | 1.42.0 | metabCombiner | 1.16.0 |
| metabinR | 1.8.0 | MetaboAnnotation | 1.10.1 |
| MetaboCoreUtils | 1.14.0 | metaboliteIDmapping | 1.0.0 |
| metabolomicsWorkbenchR | 1.16.0 | metabomxtr | 1.40.0 |
| metaCCA | 1.34.0 | MetaCycle | 1.2.0 |
| metadat | 1.4-0 | metafor | 4.8-0 |
| metagene2 | 1.22.0 | metagenomeSeq | 1.48.1 |
| metahdep | 1.64.0 | MetaNeighbor | 1.26.0 |
| metap | 1.12 | metapod | 1.14.0 |
| metapone | 1.12.0 | metaSeq | 1.46.0 |
| MetBrewer | 0.2.0 | MetCirc | 1.36.0 |
| methimpute | 1.28.0 | MethPed | 1.34.0 |
| methrix | 1.20.0 | MethTargetedNGS | 1.38.0 |
| methylKit | 1.32.1 | MethylMix | 2.36.0 |
| methylMnM | 1.44.0 | methylscaper | 1.14.0 |
| MethylSeekR | 1.46.0 | MetID | 1.24.0 |
| MetNet | 1.24.0 | metR | 0.18.1 |
| mfa | 1.28.0 | Mfuzz | 2.66.0 |
| MGFM | 1.40.0 | MGFR | 1.32.0 |
| MGLM | 0.2.1 | mgsa | 1.54.0 |
| mgsub | 1.7.3 | mhsmm | 0.4.21 |
| mia | 1.14.0 | miaSim | 1.12.0 |
| mice | 3.17.0 | MiChip | 1.60.0 |
| microbenchmark | 1.5.0 | microbiome | 1.28.0 |
| microbiomeDASim | 1.20.0 | microbiomeMarker | 1.12.2 |
| MicrobiomeStat | 1.2 | MicrobiotaProcess | 1.18.0 |
| microRNA | 1.64.0 | microSTASIS | 1.6.0 |
| miloR | 2.2.0 | mimager | 1.30.0 |
| mime | 0.13 | mina | 1.14.0 |
| minet | 3.64.0 | miniUI | 0.1.2 |
| minpack.lm | 1.2-4 | minqa | 1.2.8 |
| MiPP | 1.78.0 | miQC | 1.14.0 |
| MiRaGE | 1.48.0 | mirbase.db | 1.2.0 |
| miRBaseConverter | 1.30.0 | miRBaseVersions.db | 1.1.0 |
| miRcomp | 1.36.0 | miRcompData | 1.36.0 |
| mirIntegrator | 1.36.0 | miRNAmeConverter | 1.34.0 |
| miRNApath | 1.66.0 | miRNAtap | 1.40.0 |
| mirTarRnaSeq | 1.14.0 | misc3d | 0.9-1 |
| miscTools | 0.6-28 | missForest | 1.5 |
| missRows | 1.26.0 | mistyR | 1.14.0 |
| mitch | 1.18.4 | mitml | 0.4-5 |
| mitools | 2.4 | mixOmics | 6.30.0 |
| mixsmsn | 1.1-11 | mixsqp | 0.3-54 |
| mixtools | 2.0.0.1 | MKmisc | 1.9 |
| mlapi | 0.1.1 | mlbench | 2.1-6 |
| MLInterfaces | 1.86.0 | MLP | 1.54.0 |
| mlr3 | 0.23.0 | mlr3learners | 0.11.0 |
| mlr3measures | 1.0.0 | mlr3misc | 0.17.0 |
| mlr3tuning | 1.3.0 | MLSeq | 2.24.0 |
| mltools | 0.3.5 | mmand | 1.6.3 |
| mnem | 1.22.0 | mnormt | 2.1.1 |
| moanin | 1.14.0 | mockery | 0.4.4 |
| MODA | 1.32.0 | ModCon | 1.14.0 |
| modeest | 2.4.0 | ModelMetrics | 1.2.2.2 |
| modelr | 0.1.11 | modeltools | 0.2-24 |
| Modstrings | 1.22.0 | MOFA2 | 1.16.0 |
| MOFAdata | 1.22.0 | MOGAMUN | 1.16.0 |
| mogsa | 1.40.0 | MoleculeExperiment | 1.6.0 |
| MOMA | 1.18.0 | moments | 0.14.1 |
| monocle | 2.34.0 | mosaicCore | 0.9.4.0 |
| mosaics | 2.44.0 | mosbi | 1.12.0 |
| motifcounter | 1.30.0 | MotifDb | 1.48.0 |
| MouseFM | 1.16.0 | MPFE | 1.42.0 |
| mpm | 1.0-23 | mpra | 1.28.0 |
| MPRAnalyze | 1.24.0 | mrfDepth | 1.0.17 |
| mRMRe | 2.1.2.2 | msa | 1.38.0 |
| MSA2dist | 1.10.1 | MsBackendMassbank | 1.14.0 |
| MsBackendMgf | 1.14.0 | MsBackendMsp | 1.10.0 |
| MsBackendRawFileReader | 1.12.0 | MsBackendSql | 1.6.0 |
| MsCoreUtils | 1.18.0 | msdata | 0.46.0 |
| MsExperiment | 1.8.0 | MsFeatures | 1.14.0 |
| msgps | 1.3.5 | msigdb | 1.14.0 |
| msigdbr | 24.1.0 | msImpute | 1.16.0 |
| mslp | 1.8.0 | msm | 1.8.2 |
| MSnbase | 2.32.0 | msPurity | 1.32.0 |
| msqrob2 | 1.14.1 | MSstats | 4.14.2 |
| MSstatsBig | 1.4.0 | MSstatsConvert | 1.16.1 |
| MSstatsLOBD | 1.14.0 | MSstatsPTM | 2.8.1 |
| MSstatsShiny | 1.8.0 | MSstatsTMT | 2.14.2 |
| MuData | 1.10.0 | Mulcom | 1.56.0 |
| multcomp | 1.4-28 | multcompView | 0.1-10 |
| MultiAssayExperiment | 1.32.0 | MultiBaC | 1.16.0 |
| multiClust | 1.36.0 | multicool | 1.0.1 |
| MultiDataSet | 1.34.0 | multiGSEA | 1.16.2 |
| multiHiCcompare | 1.24.0 | MultiMed | 2.28.0 |
| multiMiR | 1.28.0 | MultimodalExperiment | 1.6.0 |
| multiscan | 1.66.0 | multitaper | 1.0-17 |
| multtest | 2.62.0 | MuMIn | 1.48.11 |
| mumosa | 1.14.0 | muscle | 3.48.0 |
| mutoss | 0.1-13 | MVCClass | 1.80.0 |
| mvnfast | 0.2.8 | mvoutlier | 2.1.1 |
| mvtnorm | 1.3-3 | mwcsr | 0.1.9 |
| mzID | 1.44.0 | mzR | 2.40.0 |
| nabor | 0.5.0 | NADA | 1.6-1.1 |
| naivebayes | 1.0.0 | naniar | 1.1.0 |
| nanoarrow | 0.6.0-1 | NanoStringDiff | 1.36.0 |
| NanoStringNCTools | 1.14.0 | nanotime | 0.3.12 |
| NanoTube | 1.12.0 | naturalsort | 0.1.3 |
| NBAMSeq | 1.22.0 | NbClust | 3.0.1 |
| NBPSeq | 0.3.1 | ncdf4 | 1.24 |
| ncdfFlow | 2.52.1 | NCIgraph | 1.54.0 |
| NCmisc | 1.2.0 | ncRNAtools | 1.16.0 |
| ndexr | 1.28.0 | Nebulosa | 1.16.0 |
| nempi | 1.14.0 | NetActivity | 1.8.0 |
| NetActivityData | 1.8.0 | nethet | 1.38.0 |
| NetPathMiner | 1.42.0 | netprioR | 1.32.0 |
| NetRep | 1.2.7 | netresponse | 1.66.0 |
| network | 1.19.0 | networkD3 | 0.4.1 |
| NewWave | 1.16.0 | NGLVieweR | 1.4.0 |
| ngsReports | 2.8.0 | nipals | 1.0 |
| nipalsMCIA | 1.4.4 | NISTunits | 1.0.1 |
| nleqslv | 3.3.5 | nloptr | 2.2.1 |
| NLP | 0.3-2 | nls2 | 0.3-4 |
| NMF | 0.28 | NMI | 2.0 |
| nnlasso | 0.3 | nnls | 1.6 |
| nnNorm | 2.70.0 | nnSVG | 1.10.3 |
| nnTensor | 1.3.0 | NOISeq | 2.50.0 |
| nondetects | 2.36.0 | nor1mix | 1.3-3 |
| norm | 1.0-11.1 | normalize450K | 1.34.0 |
| normr | 1.32.0 | nortest | 1.0-4 |
| Nozzle.R1 | 1.1-1.1 | np | 0.60-18 |
| NPARC | 1.18.0 | nsga2R | 1.1 |
| NTW | 1.56.0 | nucleoSim | 1.34.0 |
| nucleR | 2.38.0 | nuCpos | 1.24.0 |
| nullranges | 1.12.0 | numbers | 0.8-5 |
| numDeriv | 2016.8-1.1 | NuPoP | 2.14.0 |
| NxtIRFdata | 1.12.0 | objectProperties | 0.6.8 |
| objectSignals | 0.10.3 | occugene | 1.66.0 |
| OCplus | 1.80.0 | octad.db | 1.8.0 |
| odseq | 1.34.0 | officer | 0.6.8 |
| oligo | 1.70.1 | oligoClasses | 1.68.0 |
| OLIN | 1.84.0 | OLINgui | 1.80.0 |
| OmaDB | 2.22.0 | omicade4 | 1.46.0 |
| OmicCircos | 1.44.0 | omicplotR | 1.26.0 |
| OMICsPCAdata | 1.24.0 | omicsPrint | 1.26.0 |
| Omixer | 1.16.0 | OmnipathR | 3.14.0 |
| ompBAM | 1.10.0 | oncomix | 1.28.0 |
| oncoscanR | 1.8.0 | OncoScore | 1.34.0 |
| onlineFDR | 2.14.0 | ontologyIndex | 2.12 |
| ontologyPlot | 1.7 | ontoProc | 2.0.0 |
| opencpu | 2.2.14 | openCyto | 2.18.0 |
| openPrimeR | 1.28.0 | openssl | 2.3.2 |
| openxlsx | 4.2.8 | operator.tools | 1.6.3 |
| oposSOM | 2.24.0 | oppti | 1.20.0 |
| optimalFlow | 1.18.0 | optimalFlowData | 1.18.0 |
| optimx | 2025-4.9 | optparse | 1.7.5 |
| OPWeight | 1.28.0 | OrderedList | 1.78.0 |
| ordinal | 2023.12-4.1 | ore | 1.7.5.1 |
| org.Bt.eg.db | 3.20.0 | org.Ce.eg.db | 3.20.0 |
| org.Dm.eg.db | 3.20.0 | org.Dr.eg.db | 3.20.0 |
| org.Hs.eg.db | 3.20.0 | org.Mm.eg.db | 3.20.0 |
| org.Rn.eg.db | 3.20.0 | org.Sc.sgd.db | 3.20.0 |
| Organism.dplyr | 1.34.0 | OrgMassSpecR | 0.5-3 |
| origami | 1.0.7 | orthosData | 1.4.0 |
| OSAT | 1.54.0 | Oscope | 1.36.0 |
| osqp | 0.6.3.3 | OTUbase | 1.56.0 |
| outliers | 0.15 | OVESEG | 1.22.0 |
| packFinder | 1.18.0 | PADOG | 1.48.0 |
| paintmap | 1.0 | PAIRADISE | 1.22.0 |
| paircompviz | 1.44.0 | PairedData | 1.1.1 |
| pairkat | 1.12.0 | pairsD3 | 0.1.3 |
| paletteer | 1.6.0 | palmerpenguins | 0.1.1 |
| pals | 1.10 | pamr | 1.57 |
| pan | 1.9 | pandaR | 1.38.0 |
| pander | 0.6.6 | panelcn.mops | 1.28.0 |
| panp | 1.76.0 | PANR | 1.52.0 |
| paradox | 1.0.1 | parallelDist | 0.2.6 |
| ParallelLogger | 3.4.1 | parallelly | 1.44.0 |
| parameters | 0.25.0 | parglms | 1.38.0 |
| parmigene | 1.1.1 | parody | 1.64.0 |
| partCNV | 1.4.0 | partykit | 1.2-24 |
| PAST | 1.22.0 | pastecs | 1.4.2 |
| patchwork | 1.3.0 | Path2PPI | 1.36.0 |
| pathifier | 1.44.0 | PathNet | 1.46.0 |
| PathoStat | 1.32.0 | pathRender | 1.74.0 |
| pathview | 1.46.0 | pathwayPCA | 1.22.0 |
| paws.common | 0.8.3 | paws.storage | 0.9.0 |
| pbapply | 1.7-2 | pbdZMQ | 0.3-14 |
| pbivnorm | 0.6.0 | pbkrtest | 0.5.4 |
| pbmcapply | 1.5.1 | pcalg | 2.7-12 |
| pcaMethods | 1.98.0 | PCAN | 1.34.0 |
| pcaPP | 2.0-5 | PCAtools | 2.18.0 |
| pd.mapping50k.xba240 | 3.12.0 | pdfCluster | 1.0-4 |
| pdftools | 3.5.0 | pdInfoBuilder | 1.70.0 |
| pdist | 1.2.1 | PeacoQC | 1.16.0 |
| PECA | 1.42.0 | penalized | 0.9-52 |
| pengls | 1.12.0 | PepsNMR | 1.24.0 |
| pepStat | 1.40.0 | Peptides | 2.4.6 |
| pepXMLTab | 1.40.0 | PerformanceAnalytics | 2.0.8 |
| permute | 0.9-7 | PFAM.db | 3.20.0 |
| pfamAnalyzeR | 1.6.0 | pgca | 1.30.0 |
| phangorn | 2.12.1 | phantasus | 1.26.0 |
| phantasusLite | 1.4.0 | PharmacoGx | 3.10.1 |
| phastCons100way.UCSC.hg38 | 3.7.1 | pheatmap | 1.0.12 |
| PhenoGeneRanker | 1.14.0 | phenopath | 1.30.0 |
| philentropy | 0.9.0 | philr | 1.32.0 |
| PhIPData | 1.14.0 | phosphonormalizer | 1.30.0 |
| phosphoricons | 0.2.1 | phyclust | 0.1-34 |
| phylobase | 0.8.12 | phylogram | 2.1.0 |
| phylolm | 2.6.5 | PhyloProfile | 1.20.4 |
| phyloseq | 1.50.0 | piano | 2.22.0 |
| pickgene | 1.78.0 | PICS | 2.50.0 |
| pillar | 1.10.2 | pinfsc50 | 1.3.0 |
| pingr | 2.0.5 | pipeFrame | 1.22.0 |
| pixmap | 0.4-13 | pkgbuild | 1.4.7 |
| pkgconfig | 2.0.3 | pkgdown | 2.1.2 |
| pkgload | 1.4.0 | planet | 1.14.0 |
| planttfhunter | 1.6.0 | plasmut | 1.4.0 |
| plgem | 1.78.0 | plier | 1.76.0 |
| plogr | 0.2.0 | plot3D | 1.4.1 |
| plot3Drgl | 1.0.4 | plotgardener | 1.12.0 |
| plotly | 4.10.4 | plotmo | 3.6.4 |
| plotrix | 3.8-4 | plotROC | 2.3.1 |
| PLPE | 1.66.0 | pls | 2.8-5 |
| plsgenomics | 1.5-3 | plsVarSel | 0.9.13 |
| plyr | 1.8.9 | plyranges | 1.26.0 |
| PMA | 1.2-4 | PMCMRplus | 1.9.12 |
| pmm | 1.38.0 | pmp | 1.18.0 |
| png | 0.1-8 | PoDCall | 1.14.0 |
| poibin | 1.6 | PoiClaClu | 1.0.2.1 |
| polspline | 1.1.25 | Polychrome | 1.5.4 |
| polyclip | 1.10-7 | polylabelr | 0.3.0 |
| polynom | 1.4-1 | PolynomF | 2.0-8 |
| poorman | 0.2.7 | posterior | 1.6.1 |
| poweRlaw | 1.0.0 | powerTCR | 1.26.0 |
| POWSC | 1.14.0 | ppclust | 1.1.0.1 |
| ppcor | 1.1 | ppcseq | 1.14.0 |
| PPInfer | 1.32.0 | pqsfinder | 2.22.0 |
| prabclus | 2.3-4 | pracma | 2.4.4 |
| praise | 1.0.0 | pram | 1.22.0 |
| praznik | 11.0.0 | prebs | 1.46.0 |
| precrec | 0.14.5 | PREDA | 1.52.0 |
| preprocessCore | 1.68.0 | preseqR | 4.0.0 |
| prettydoc | 0.4.1 | prettyunits | 1.2.0 |
| PRIMME | 3.2-6 | princurve | 2.1.6 |
| prismatic | 1.1.2 | pROC | 1.18.5 |
| PROcess | 1.82.0 | processx | 3.8.6 |
| procoil | 2.34.0 | proDA | 1.20.0 |
| prodlim | 2025.04.28 | profileModel | 0.6.1 |
| profileScoreDist | 1.34.0 | profmem | 0.7.0 |
| profvis | 0.4.0 | progeny | 1.28.0 |
| progress | 1.2.3 | progressr | 0.15.1 |
| proj4 | 1.0-15 | projectR | 1.22.0 |
| PROMISE | 1.58.0 | promises | 1.3.2 |
| PROPER | 1.38.0 | proteinProfiles | 1.46.0 |
| ProteoMM | 1.24.0 | ProtGenerics | 1.38.0 |
| proto | 1.0.0 | protolite | 2.3.1 |
| protr | 1.7-4 | protViz | 0.7.9 |
| proxy | 0.4-27 | proxyC | 0.5.2 |
| PRROC | 1.4 | pryr | 0.1.6 |
| ps | 1.9.1 | PSCBS | 0.68.0 |
| pscl | 1.5.9 | PSMatch | 1.10.0 |
| pspline | 1.0-21 | psych | 2.5.3 |
| ptw | 1.9-16 | puma | 3.48.0 |
| purrr | 1.0.4 | pvac | 1.54.0 |
| pvca | 1.46.0 | pvclust | 2.2-0 |
| pwalign | 1.2.0 | PWMEnrich | 4.42.0 |
| pwr | 1.3-0 | qap | 0.1-2 |
| qckitfastq | 1.22.0 | qcmetrics | 1.44.0 |
| qdapRegex | 0.7.10 | qdapTools | 1.3.7 |
| QDNAseq | 1.42.0 | QFeatures | 1.16.0 |
| qgraph | 1.9.8 | qlcMatrix | 0.9.8 |
| qpcrNorm | 1.64.0 | qpdf | 1.3.5 |
| qpgraph | 2.40.0 | qqconf | 1.3.2 |
| qqman | 0.1.9 | qs | 0.27.3 |
| qsea | 1.32.0 | QSutils | 1.24.0 |
| qtl | 1.70 | QTLExperiment | 1.4.0 |
| Qtlizer | 1.20.1 | quadprog | 1.5-8 |
| qualV | 0.3-5 | quanteda | 4.2.0 |
| quantiseqr | 1.14.0 | quantmod | 0.4.27 |
| quantreg | 6.1 | quantsmooth | 1.72.0 |
| quarto | 1.4.4 | QuaternaryProd | 1.40.0 |
| QUBIC | 1.34.0 | questionr | 0.8.0 |
| QuickJSR | 1.7.0 | qusage | 2.40.0 |
| qvalue | 2.38.0 | qvcalc | 1.0.4 |
| R.cache | 0.17.0 | R.devices | 2.17.2 |
| R.filesets | 2.15.1 | R.huge | 0.10.1 |
| R.matlab | 3.7.0 | R.methodsS3 | 1.8.2 |
| R.oo | 1.27.1 | R.rsp | 0.46.0 |
| R.utils | 2.13.0 | R2HTML | 2.3.4 |
| R2jags | 0.8-9 | R2WinBUGS | 2.1-22.1 |
| r3Cseq | 1.52.0 | R4RNA | 1.34.0 |
| R6 | 2.6.1 | R6P | 0.4.0 |
| RadioGx | 2.10.0 | rafalib | 1.0.4 |
| ragg | 1.4.0 | RaggedExperiment | 1.30.0 |
| rain | 1.40.0 | rainbow | 3.8 |
| ramr | 1.14.0 | ramwas | 1.30.0 |
| randomcoloR | 1.1.0.1 | randomForest | 4.7-1.2 |
| randomizr | 1.0.0 | randPack | 1.52.0 |
| randRotation | 1.18.0 | randtests | 1.0.2 |
| randtoolbox | 2.0.5 | ranger | 0.17.0 |
| RankAggreg | 0.6.6 | RankProd | 3.32.0 |
| RANN | 2.6.2 | rapiclient | 0.1.8 |
| rapidjsonr | 1.2.0 | RApiSerialize | 0.1.4 |
| rappdirs | 0.3.3 | rapportools | 1.2 |
| RAREsim | 1.10.0 | rARPACK | 0.11-0 |
| Rarr | 1.6.0 | raster | 3.6-32 |
| rawrr | 1.14.0 | RbcBook1 | 1.74.0 |
| rBeta2009 | 1.0.1 | RBGL | 1.82.0 |
| rbibutils | 2.3 | RBioFormats | 1.6.0 |
| RBioinf | 1.66.0 | rbiom | 2.2.0 |
| rBiopaxParser | 2.46.0 | RBM | 1.38.0 |
| rbokeh | 0.5.1 | Rbowtie | 1.46.0 |
| Rbowtie2 | 2.12.3 | rbsurv | 2.64.0 |
| Rbwa | 1.10.0 | RCASPAR | 1.52.0 |
| rcdk | 3.8.1 | rcdklibs | 2.9 |
| rcellminer | 2.28.0 | rcellminerData | 2.28.0 |
| RCircos | 1.2.2 | rclipboard | 0.2.1 |
| RCM | 1.22.0 | rcmdcheck | 1.4.0 |
| Rcollectl | 1.6.0 | RColorBrewer | 1.1-3 |
| Rcpi | 1.42.0 | Rcpp | 1.0.14 |
| RcppAlgos | 2.9.3 | RcppAnnoy | 0.0.22 |
| RcppArmadillo | 14.4.2-1 | RcppCCTZ | 0.2.13 |
| RcppDate | 0.0.5 | RcppDE | 0.1.8 |
| RcppDist | 0.1.1 | RcppEigen | 0.3.4.0.2 |
| RcppGSL | 0.3.13 | RcppHNSW | 0.6.0 |
| RcppInt64 | 0.0.5 | RcppML | 0.3.7 |
| RcppNumerical | 0.6-0 | RcppParallel | 5.1.10 |
| RcppProgress | 0.4.2 | RcppRoll | 0.3.1 |
| RcppSpdlog | 0.0.22 | RcppThread | 2.2.0 |
| RcppTOML | 0.2.3 | RCSL | 1.14.0 |
| RCurl | 1.98-1.17 | Rcwl | 1.22.0 |
| RcwlPipelines | 1.22.0 | RCX | 1.10.0 |
| RCy3 | 2.26.0 | RCyjs | 2.28.0 |
| Rdisop | 1.66.0 | rdist | 0.0.5 |
| Rdpack | 2.6.4 | RDRToolbox | 1.56.0 |
| reactable | 0.4.4 | reactome.db | 1.89.0 |
| ReactomeGSA | 1.20.0 | reactR | 0.6.1 |
| readbitmap | 0.1.5 | reader | 1.0.6 |
| readJDX | 0.6.4 | ReadqPCR | 1.52.0 |
| readr | 2.1.5 | readxl | 1.4.5 |
| rearrr | 0.3.5 | REBET | 1.24.0 |
| rebook | 1.16.0 | rebus | 0.1-3 |
| rebus.base | 0.0-3 | rebus.datetimes | 0.0-2 |
| rebus.numbers | 0.0-1 | rebus.unicode | 0.0-2 |
| receptLoss | 1.18.0 | recipes | 1.3.0 |
| reconsi | 1.18.0 | RecordLinkage | 0.4-12.4 |
| recount3 | 1.16.0 | RedeR | 3.2.0 |
| RedisParam | 1.8.0 | redux | 1.1.4 |
| RefManageR | 1.4.0 | reformulas | 0.4.1 |
| regionalpcs | 1.4.0 | regioneR | 1.38.0 |
| registry | 0.5-1 | regsplice | 1.32.0 |
| relations | 0.6-15 | reldist | 1.7-2 |
| relimp | 1.0-5 | remaCor | 0.0.18 |
| rematch | 2.0.0 | rematch2 | 2.1.2 |
| remotes | 2.5.0 | rentrez | 1.2.3 |
| renv | 1.1.4 | Repitools | 1.52.0 |
| repmis | 0.5 | repo | 2.1.5 |
| reportr | 1.3.1 | repr | 1.1.7 |
| reprex | 2.1.1 | RepViz | 1.22.0 |
| reshape | 0.8.9 | reshape2 | 1.4.4 |
| ResidualMatrix | 1.16.0 | restfulr | 0.0.15 |
| reticulate | 1.42.0 | retrofit | 1.6.0 |
| ReUseData | 1.6.0 | rex | 1.2.1 |
| rfaRm | 1.18.0 | Rfast | 2.1.5.1 |
| Rfastp | 1.16.0 | rfPred | 1.44.0 |
| rGADEM | 2.54.0 | rGenomeTracksData | 0.99.0 |
| rgl | 1.3.18 | rgoslin | 1.10.0 |
| RGraph2js | 1.34.0 | Rgraphviz | 2.50.0 |
| RGSEA | 1.40.0 | rhandsontable | 0.3.8 |
| rhdf5 | 2.50.2 | rhdf5client | 1.28.0 |
| rhdf5filters | 1.18.1 | Rhdf5lib | 1.28.0 |
| RhpcBLASctl | 0.23-42 | Rhtslib | 3.2.0 |
| ribor | 1.18.0 | riboSeqR | 1.40.0 |
| ridge | 3.3 | rifiComparative | 1.6.0 |
| RImmPort | 1.34.0 | rintrojs | 0.3.4 |
| rio | 1.2.3 | RISmed | 2.3.0 |
| RITANdata | 1.30.0 | RIVER | 1.30.0 |
| rjags | 4-17 | rJava | 1.0-11 |
| rjson | 0.2.23 | rjsoncons | 1.3.2 |
| RJSONIO | 2.0.0 | Rlab | 4.0 |
| rlang | 1.1.6 | RLassoCox | 1.14.0 |
| RLHub | 0.99.5 | rlist | 0.4.6.2 |
| RLMM | 1.68.0 | Rmagpie | 1.62.0 |
| RMariaDB | 1.3.4 | rmarkdown | 2.29 |
| rmdformats | 1.0.4 | rmelting | 1.22.0 |
| rmeta | 3.0 | rmio | 0.4.0 |
| Rmisc | 1.5.1 | Rmixmod | 2.1.10 |
| Rmpfr | 1.1-0 | Rmpi | 0.7-3.3 |
| rms | 8.0-0 | rmspc | 1.12.0 |
| RMTstat | 0.3.1 | rmutil | 1.1.10 |
| RMySQL | 0.11.1 | rmzqc | 0.5.5 |
| RNAdecay | 1.26.0 | RNAsense | 1.20.0 |
| rnaseqcomp | 1.36.0 | RNAseqCovarImpute | 1.4.0 |
| RNASeqPower | 1.46.0 | RnaSeqSampleSizeData | 1.38.0 |
| RnBeads.hg19 | 1.38.0 | RnBeads.hg38 | 1.38.1 |
| rncl | 0.8.7 | RNeXML | 2.4.11 |
| rngtools | 1.5.2 | rngWELL | 0.10-10 |
| RNifti | 1.8.0 | Rnits | 1.40.0 |
| RNOmni | 1.0.1.2 | roar | 1.42.0 |
| roastgsa | 1.4.0 | robslopes | 1.1.3 |
| robust | 0.7-5 | robustbase | 0.99-4-1 |
| RobustRankAggreg | 1.2.1 | ROC | 1.82.0 |
| ROCit | 2.1.2 | ROCpAI | 1.18.0 |
| ROCR | 1.0-11 | ROI | 1.0-1 |
| ROI.plugin.lpsolve | 1.0-2 | RolDE | 1.10.0 |
| rols | 3.2.0 | ROntoTools | 2.34.0 |
| Rook | 1.2 | rootSolve | 1.8.2.4 |
| ropls | 1.38.0 | roptim | 0.1.6 |
| rorcid | 0.7.0 | ROSeq | 1.18.0 |
| ROTS | 1.34.0 | roxygen2 | 7.3.2 |
| RPA | 1.62.0 | rpart.plot | 3.1.2 |
| RPMM | 1.25 | rprimer | 1.10.0 |
| rprojroot | 2.0.4 | RProtoBufLib | 2.18.0 |
| rpx | 2.14.1 | rqubic | 1.52.0 |
| rrcov | 1.7-7 | rRDP | 1.40.0 |
| RRHO | 1.46.0 | rrvgo | 1.18.0 |
| rsample | 1.3.0 | Rsamtools | 2.22.0 |
| rsbml | 2.64.0 | rScudo | 1.22.0 |
| rsemmed | 1.16.0 | RSeqAn | 1.26.0 |
| RSKC | 2.4.2 | rslurm | 0.6.2 |
| rsm | 2.10.6 | RSNNS | 0.4-17 |
| Rsolnp | 1.16 | rsparse | 0.5.3 |
| RSpectra | 0.16-2 | rSpectral | 1.0.0.10 |
| rsq | 2.7 | RSQLite | 2.3.11 |
| rstan | 2.32.7 | rstantools | 2.4.0 |
| rstudioapi | 0.17.1 | Rsubread | 2.20.0 |
| rsvd | 1.0.5 | rsvg | 2.6.2 |
| RSVSim | 1.46.0 | rSWeeP | 1.18.0 |
| RTCA | 1.58.0 | rTensor | 1.4.8 |
| RTopper | 1.52.0 | Rtpca | 1.16.0 |
| rtracklayer | 1.66.0 | Rtreemix | 1.68.0 |
| RTriangle | 1.6-0.15 | rTRM | 1.44.0 |
| Rtsne | 0.17 | Rttf2pt1 | 1.3.12 |
| runibic | 1.28.0 | RUnit | 0.4.33 |
| ruv | 0.9.7.1 | RUVcorr | 1.38.0 |
| RUVnormalize | 1.40.0 | RUVnormalizeData | 1.26.0 |
| rversions | 2.1.2 | rvest | 1.0.4 |
| rvinecopulib | 0.7.2.1.0 | Rvisdiff | 1.4.0 |
| RVS | 1.28.0 | RWeka | 0.4-46 |
| RWekajars | 3.9.3-2 | rWikiPathways | 1.26.0 |
| s2 | 1.1.8 | S4Arrays | 1.6.0 |
| s4vd | 1.1-1 | S4Vectors | 0.44.0 |
| safe | 3.46.0 | safetensors | 0.1.2 |
| sagenhaft | 1.76.0 | SAIGEgds | 2.6.0 |
| sampleClassifier | 1.30.0 | sampling | 2.10 |
| SamSPECTRAL | 1.60.0 | sandwich | 3.1-1 |
| sangeranalyseR | 1.16.0 | sangerseqR | 1.42.0 |
| SANTA | 2.42.0 | sarks | 1.18.0 |
| sass | 0.4.10 | satuRn | 1.14.0 |
| SAVER | 1.1.2 | SBGNview | 1.20.0 |
| SBGNview.data | 1.20.0 | SBMLR | 2.2.0 |
| SC3 | 1.34.0 | Scale4C | 1.28.0 |
| ScaledMatrix | 1.14.0 | scales | 1.4.0 |
| scam | 1.2-18 | scanMiR | 1.12.0 |
| scanMiRData | 1.12.0 | scAnnotatR | 1.12.0 |
| SCANVIS | 1.20.0 | SCArray | 1.14.0 |
| SCArray.sat | 1.6.0 | scater | 1.34.1 |
| scatterHatch | 1.12.0 | scattermore | 1.2 |
| scatterpie | 0.2.4 | scatterplot3d | 0.3-44 |
| SCBN | 1.24.0 | scBubbletree | 1.8.0 |
| sccomp | 1.10.0 | scDataviz | 1.16.0 |
| scDblFinder | 1.20.2 | scDD | 1.30.0 |
| scDDboost | 1.8.1 | scde | 2.34.0 |
| scDesign3 | 1.4.0 | scds | 1.22.0 |
| SCFA | 1.16.0 | scFeatureFilter | 1.26.0 |
| scGPS | 1.20.0 | schex | 1.20.0 |
| scHOT | 1.18.0 | scico | 1.5.0 |
| scider | 1.4.0 | scifer | 1.8.1 |
| scmap | 1.28.0 | scMET | 1.8.0 |
| SCnorm | 1.28.0 | Sconify | 1.26.0 |
| scp | 1.16.0 | scPCA | 1.20.0 |
| scPipe | 2.6.0 | scran | 1.34.0 |
| scReClassify | 1.12.0 | scRecover | 1.22.0 |
| screenCounter | 1.6.0 | ScreenR | 1.8.0 |
| scRepertoire | 2.2.1 | scrime | 1.3.5 |
| scry | 1.18.0 | scrypt | 0.1.6 |
| scs | 3.2.7 | scShapes | 1.12.0 |
| scTGIF | 1.20.0 | scTHI | 1.18.0 |
| sctransform | 0.4.2 | scuttle | 1.16.0 |
| SDAMS | 1.26.0 | sechm | 1.14.0 |
| segmented | 2.1-4 | segmentSeq | 2.40.0 |
| selectr | 0.4-2 | SELEX | 1.38.0 |
| SemDist | 1.40.0 | semisup | 1.30.0 |
| sendmailR | 1.4-0 | seq.hotSPOT | 1.6.0 |
| seq2pathway | 1.38.0 | seq2pathway.data | 1.38.0 |
| seqArchR | 1.10.0 | SeqArray | 1.46.3 |
| seqcombo | 1.28.0 | SeqGate | 1.16.0 |
| SeqGSEA | 1.46.0 | seqinr | 4.2-36 |
| seqLogo | 1.72.0 | seqmagick | 0.1.7 |
| seqminer | 9.7 | seqPattern | 1.38.0 |
| seqsetvis | 1.26.0 | SeqSQC | 1.28.0 |
| seqTools | 1.40.0 | SeqVarTools | 1.44.0 |
| seriation | 1.5.7 | servr | 0.32 |
| sesameData | 1.24.0 | sessioninfo | 1.2.3 |
| setRNG | 2024.2-1 | sets | 1.0-25 |
| settings | 0.2.7 | Seurat | 5.3.0 |
| SeuratObject | 5.1.0 | sevenbridges | 1.36.0 |
| sevenC | 1.26.0 | sf | 1.0-21 |
| sfheaders | 0.4.4 | sfsmisc | 1.1-20 |
| sftime | 0.3.0 | sgeostat | 1.0-27 |
| SGSeq | 1.40.0 | shades | 1.4.0 |
| shadowtext | 0.1.4 | shape | 1.4.6.1 |
| SharedObject | 1.20.0 | shiny | 1.10.0 |
| shinyAce | 0.4.4 | shinyalert | 3.1.0 |
| shinyBS | 0.61.1 | shinybusy | 0.3.3 |
| shinycssloaders | 1.1.0 | shinycustomloader | 0.9.0 |
| shinyCyJS | 1.0.0 | shinydashboard | 0.7.3 |
| shinydashboardPlus | 2.0.5 | shinyFeedback | 0.4.0 |
| shinyFiles | 0.9.3 | shinyHeatmaply | 0.2.0 |
| shinyhelper | 0.3.2 | shinyjqui | 0.4.1 |
| shinyjs | 2.1.0 | shinylogs | 0.2.1 |
| shinymanager | 1.0.410 | shinyMatrix | 0.8.0 |
| shinymeta | 0.2.1 | shinyscreenshot | 0.2.1 |
| shinythemes | 1.2.0 | shinytitle | 0.1.0 |
| shinytoastr | 2.2.0 | shinyTree | 0.3.1 |
| shinyvalidate | 0.1.3 | shinyWidgets | 0.9.0 |
| ShortRead | 1.64.0 | SIAMCAT | 2.10.0 |
| SICtools | 1.36.0 | sigclust | 1.1.0.1 |
| sigFeature | 1.24.0 | SigFuge | 1.44.0 |
| siggenes | 1.80.0 | sights | 1.32.0 |
| Signac | 1.14.0 | signal | 1.8-1 |
| sigsquared | 1.38.0 | SIMAT | 1.38.0 |
| SimBu | 1.8.0 | SIMD | 1.24.0 |
| SimFFPE | 1.18.0 | similaRpeak | 1.38.0 |
| SIMLR | 1.32.0 | simona | 1.4.0 |
| simpIntLists | 1.42.0 | simpleCache | 0.4.2 |
| simpleSeg | 1.8.1 | simplifyEnrichment | 2.0.0 |
| sincell | 1.38.0 | SingleCellExperiment | 1.28.1 |
| SingleCellSignalR | 1.18.0 | SingleR | 2.8.0 |
| singscore | 1.26.0 | SiPSiC | 1.6.0 |
| sitePath | 1.22.0 | sitmo | 2.0.2 |
| sizepower | 1.76.0 | sjlabelled | 1.2.0 |
| sjmisc | 2.8.10 | skmeans | 0.2-18 |
| slalom | 1.28.0 | slam | 0.1-55 |
| slider | 0.3.2 | slingshot | 2.14.0 |
| SLqPCR | 1.72.0 | sm | 2.2-6.0 |
| SMAD | 1.22.0 | smatr | 3.4-8 |
| smoother | 1.3 | smoothie | 1.0-4 |
| smurf | 1.1.7 | sn | 2.1.1 |
| sna | 2.8 | SNAGEE | 1.46.0 |
| SNAGEEdata | 1.42.0 | snakecase | 0.11.1 |
| snapcount | 1.18.0 | snifter | 1.16.0 |
| snm | 1.54.0 | snow | 0.4-4 |
| SnowballC | 0.7.1 | snowfall | 1.84-6.3 |
| SNPediaR | 1.32.0 | SNPlocs.Hsapiens.dbSNP144.GRCh37 | 0.99.20 |
| SNPRelate | 1.40.0 | snpStats | 1.56.0 |
| softImpute | 1.4-3 | soGGi | 1.38.0 |
| som | 0.3-5.2 | SOMbrero | 1.4-2 |
| sonicLength | 1.4.7 | sortable | 0.5.0 |
| SoupX | 1.6.2 | sourcetools | 0.1.7-1 |
| sp | 2.2-0 | spacetime | 1.3-3 |
| spam | 2.11-1 | Spaniel | 1.20.0 |
| sparcl | 1.0.4 | sparklyr | 1.9.0 |
| sparrow | 1.12.0 | SparseArray | 1.6.2 |
| SparseM | 1.84-2 | sparseMatrixStats | 1.18.0 |
| sparseMVN | 0.2.2 | sparsenetgls | 1.24.0 |
| sparsepca | 0.1.2 | sparsesvd | 0.2-2 |
| sparsevctrs | 0.3.3 | spaSim | 1.8.0 |
| SpatialCPie | 1.22.0 | spatialDE | 1.12.0 |
| SpatialDecon | 1.16.0 | SpatialExperiment | 1.16.0 |
| SpatialExtremes | 2.1-0 | SpatialFeatureExperiment | 1.8.6 |
| spatialHeatmap | 2.12.1 | SpatialOmicsOverlay | 1.6.0 |
| spatialreg | 1.3-6 | SpatialTools | 1.0.5 |
| spatstat.data | 3.1-6 | spatstat.explore | 3.4-2 |
| spatstat.geom | 3.3-6 | spatstat.random | 3.3-3 |
| spatstat.sparse | 3.1-0 | spatstat.univar | 3.1-3 |
| spatstat.utils | 3.1-4 | spBayes | 0.4-8 |
| spData | 2.3.4 | spdep | 1.3-11 |
| spdl | 0.0.5 | speaq | 2.7.0 |
| speckle | 1.6.0 | specL | 1.40.0 |
| SpeCond | 1.60.0 | Spectra | 1.16.1 |
| SpectralTAD | 1.22.0 | speedglm | 0.3-5 |
| SPEM | 1.46.0 | SPIA | 2.58.0 |
| SPIAT | 1.8.1 | spikeLI | 2.66.0 |
| spkTools | 1.62.0 | splancs | 2.01-45 |
| splatter | 1.30.0 | SplicingFactory | 1.14.0 |
| SplicingGraphs | 1.46.0 | splineTimeR | 1.34.0 |
| splitstackshape | 1.4.8 | splots | 1.72.0 |
| splus2R | 1.3-5 | SpotClean | 1.8.0 |
| SPOTlight | 1.10.0 | spqn | 1.18.0 |
| spsComps | 0.3.3.0 | SPsimSeq | 1.16.0 |
| spsUtil | 0.2.2 | SQLDataFrame | 1.20.0 |
| sqldf | 0.4-11 | SQUAREM | 2021.1 |
| squash | 1.0.9 | sRACIPE | 1.22.0 |
| SRAdb | 1.68.1 | ssc | 2.1-0 |
| sscu | 2.36.0 | sSeq | 1.44.0 |
| ssize | 1.80.0 | sSNAPPY | 1.10.0 |
| ssrch | 1.22.0 | ssviz | 1.40.0 |
| stable | 1.1.6 | stabledist | 0.7-2 |
| stabs | 0.6-4 | stageR | 1.28.0 |
| StanHeaders | 2.32.10 | stars | 0.6-8 |
| startupmsg | 1.0.0 | statebins | 1.4.0 |
| STATegRa | 1.42.0 | statip | 0.2.3 |
| statmod | 1.5.0 | statnet.common | 4.11.0 |
| statTarget | 1.36.0 | stemHypoxia | 1.42.0 |
| stepNorm | 1.78.0 | stJoincount | 1.8.0 |
| stopwords | 2.3 | storr | 1.2.6 |
| strawr | 0.0.92 | Streamer | 1.52.0 |
| strex | 2.0.1 | STRINGdb | 2.18.0 |
| stringdist | 0.9.15 | stringfish | 0.16.0 |
| stringi | 1.8.7 | stringr | 1.5.1 |
| strucchange | 1.5-4 | struct | 1.18.0 |
| Structstrings | 1.22.1 | structToolbox | 1.18.2 |
| styler | 1.10.3 | SubCellBarCode | 1.22.0 |
| subSeq | 1.36.0 | subspace | 1.0.4 |
| SUITOR | 1.8.0 | SummarizedExperiment | 1.36.0 |
| summarytools | 1.1.4 | Summix | 2.12.0 |
| superheat | 0.1.0 | SuperLearner | 2.0-29 |
| supersigs | 1.14.0 | SuppDists | 1.1-9.9 |
| supraHex | 1.40.0 | surfaltr | 1.12.0 |
| survcomp | 1.56.0 | survey | 4.4-2 |
| survivalROC | 1.0.3.1 | survivalsvm | 0.0.6 |
| survMisc | 0.5.6 | sva | 3.54.0 |
| svd | 0.5.8 | svglite | 2.2.1 |
| svgPanZoom | 0.3.4 | svMisc | 1.4.3 |
| svUnit | 1.0.6 | swamp | 1.5.1 |
| SWATH2stats | 1.36.0 | SwathXtend | 2.28.0 |
| swfdr | 1.32.0 | switchBox | 1.42.0 |
| switchde | 1.32.0 | sylly | 0.1-6 |
| sylly.en | 0.1-3 | synapsis | 1.12.0 |
| SynExtend | 1.18.0 | synlet | 2.6.0 |
| SynMut | 1.22.0 | syntenet | 1.8.1 |
| sys | 3.4.3 | systemfonts | 1.2.3 |
| systemPipeR | 2.12.0 | systemPipeShiny | 1.16.0 |
| systemPipeTools | 1.14.0 | syuzhet | 1.0.7 |
| tagcloud | 0.6 | tanggle | 1.12.0 |
| target | 1.20.0 | TargetScore | 1.44.0 |
| TargetSearch | 2.8.0 | TBX20BamSubset | 1.42.0 |
| TCA | 1.2.1 | TCC | 1.46.0 |
| TCGAbiolinks | 2.34.1 | TCGAbiolinksGUI.data | 1.26.0 |
| TCGAutils | 1.26.0 | tcltk2 | 1.2-11 |
| TCseq | 1.30.0 | TDbasedUFE | 1.6.0 |
| TeachingDemos | 2.13 | TEKRABber | 1.10.0 |
| tensor | 1.5 | tensorA | 0.36.2.1 |
| tensorflow | 2.16.0 | TENxIO | 1.8.2 |
| TENxPBMCData | 1.24.0 | TEQC | 4.28.0 |
| ternarynet | 1.50.0 | terra | 1.8-50 |
| tester | 0.2.0 | testthat | 3.2.3 |
| text2vec | 0.6.4 | textclean | 0.9.3 |
| textshape | 1.7.5 | textshaping | 1.0.1 |
| textstem | 0.1.4 | TFARM | 1.28.0 |
| tfautograph | 0.3.2 | TFBSTools | 1.44.0 |
| TFEA.ChIP | 1.26.0 | TFisher | 0.2.0 |
| TFMPvalue | 0.0.9 | tfruns | 1.5.3 |
| TFutils | 1.26.0 | TH.data | 1.1-3 |
| threejs | 0.3.4 | tibble | 3.2.1 |
| tictoc | 1.2.1 | tidybayes | 3.0.7 |
| tidybulk | 1.18.0 | tidydr | 0.0.5 |
| tidygraph | 1.3.1 | tidyHeatmap | 1.11.6 |
| tidyr | 1.3.1 | tidyselect | 1.2.1 |
| tidySingleCellExperiment | 1.16.0 | tidySummarizedExperiment | 1.16.0 |
| tidytext | 0.4.2 | tidytidbits | 0.3.2 |
| tidytree | 0.4.6 | tidyverse | 2.0.0 |
| tiff | 0.1-12 | tigre | 1.60.0 |
| tiledb | 0.32.0 | TileDBArray | 1.16.0 |
| tilingArray | 1.84.0 | timechange | 0.3.0 |
| timecourse | 1.78.0 | timeDate | 4041.110 |
| timeOmics | 1.18.0 | timescape | 1.30.0 |
| timeSeries | 4041.111 | timsac | 1.3.8-4 |
| tinytex | 0.57 | tippy | 0.1.0 |
| TissueEnrich | 1.26.0 | tkrplot | 0.0-29 |
| tkWidgets | 1.84.0 | tm | 0.7-16 |
| TMB | 1.9.17 | TMixClust | 1.28.0 |
| tmvtnorm | 1.6 | tnet | 3.0.16 |
| TnT | 1.28.0 | TOAST | 1.20.0 |
| toastui | 0.4.0 | tokenizers | 0.3.0 |
| tomoda | 1.16.0 | tomoseqr | 1.10.0 |
| topconfects | 1.22.0 | topGO | 2.58.0 |
| topicmodels | 0.2-17 | torch | 0.14.2 |
| ToxicoGx | 2.10.0 | TPP | 3.34.0 |
| TPP2D | 1.22.0 | tracktables | 1.40.0 |
| tractor.base | 3.4.2 | tradeSeq | 1.20.0 |
| TrajectoryGeometry | 1.14.0 | TrajectoryUtils | 1.14.0 |
| transformGamPoi | 1.12.0 | transformr | 0.1.5 |
| transite | 1.24.0 | tRanslatome | 1.44.0 |
| transomics2cytoscape | 1.16.0 | transport | 0.15-4 |
| TreeAndLeaf | 1.18.0 | treeio | 1.30.0 |
| treemap | 2.4-4 | TreeSummarizedExperiment | 2.14.0 |
| TREG | 1.10.0 | Trendy | 1.28.0 |
| TRESS | 1.12.0 | tricycle | 1.14.0 |
| triebeard | 0.4.1 | trio | 3.44.0 |
| triplex | 1.46.0 | tripr | 1.12.0 |
| tRNA | 1.24.0 | tRNAdbImport | 1.24.0 |
| tRNAscanImport | 1.26.0 | TRONCO | 2.38.0 |
| truncdist | 1.0-2 | truncnorm | 1.0-9 |
| trust | 0.1-8 | TSCAN | 1.44.0 |
| tseries | 0.10-58 | tsne | 0.1-3.1 |
| TSP | 1.2-4 | ttgsea | 1.14.0 |
| TTMap | 1.28.0 | TTR | 0.24.4 |
| ttservice | 0.4.1 | TurboNorm | 1.54.0 |
| tweeDEseq | 1.52.0 | tweedie | 2.3.5 |
| tweenr | 2.0.3 | twilight | 1.82.0 |
| twoddpcr | 1.30.0 | TxDb.Celegans.UCSC.ce6.ensGene | 3.2.2 |
| TxDb.Dmelanogaster.UCSC.dm3.ensGene | 3.2.2 | TxDb.Dmelanogaster.UCSC.dm6.ensGene | 3.12.0 |
| TxDb.Hsapiens.UCSC.hg18.knownGene | 3.2.2 | TxDb.Hsapiens.UCSC.hg19.knownGene | 3.2.2 |
| TxDb.Hsapiens.UCSC.hg38.knownGene | 3.20.0 | TxDb.Mmusculus.UCSC.mm10.knownGene | 3.10.0 |
| TxDb.Mmusculus.UCSC.mm9.knownGene | 3.2.2 | TxDb.Rnorvegicus.UCSC.rn4.ensGene | 3.2.2 |
| txdbmaker | 1.2.1 | tximport | 1.34.0 |
| tximportData | 1.34.0 | tzdb | 0.5.0 |
| UCell | 2.10.1 | ucminf | 1.2.2 |
| UCSC.utils | 1.2.0 | umap | 0.2.10.0 |
| UNDO | 1.48.0 | unifiedWMWqPCR | 1.42.0 |
| UniProt.ws | 2.46.1 | uniqtag | 1.0.1 |
| units | 0.8-7 | universalmotif | 1.24.2 |
| unmarked | 1.5.0 | updateObject | 1.10.0 |
| UpSetR | 1.4.0 | urca | 1.3-4 |
| urlchecker | 1.0.1 | urltools | 1.7.3 |
| usethis | 3.1.0 | uSORT | 1.32.0 |
| utf8 | 1.2.5 | uuid | 1.2-1 |
| uwot | 0.2.3 | V8 | 6.0.3 |
| VAM | 1.1.0 | varhandle | 2.0.6 |
| variancePartition | 1.36.3 | VariantAnnotation | 1.52.0 |
| VariantExperiment | 1.20.0 | varSelRF | 0.7-8 |
| vbmp | 1.74.0 | vcd | 1.4-13 |
| vcfR | 1.15.0 | vctrs | 0.6.5 |
| VDJdive | 1.8.0 | VegaMC | 3.44.0 |
| vegan | 2.6-10 | velociraptor | 1.16.0 |
| veloviz | 1.12.0 | venn | 1.12 |
| VennDetail | 1.22.0 | VennDiagram | 1.7.3 |
| VERSO | 1.16.0 | VGAM | 1.1-13 |
| vidger | 1.26.0 | vioplot | 0.5.1 |
| viper | 1.40.0 | vipor | 0.4.7 |
| viridis | 0.6.5 | viridisLite | 0.4.2 |
| visdat | 0.6.0 | visNetwork | 2.1.2 |
| VplotR | 1.16.0 | vroom | 1.6.5 |
| vsclust | 1.8.0 | vsn | 3.74.0 |
| waddR | 1.20.0 | waffle | 1.0.2 |
| waiter | 0.2.5 | waldo | 0.6.1 |
| warp | 0.2.1 | waveslim | 1.8.5 |
| wavethresh | 4.7.3 | wdm | 0.2.6 |
| weaver | 1.72.0 | webchem | 1.3.0 |
| webshot | 0.5.5 | webutils | 1.2.2 |
| weitrix | 1.18.0 | wesanderson | 0.3.7 |
| WGCNA | 1.73 | wheatmap | 0.2.0 |
| whisker | 0.4.1 | widgetTools | 1.84.0 |
| wiggleplotr | 1.30.0 | withr | 3.0.2 |
| wk | 0.9.4 | word2vec | 0.4.0 |
| wordcloud | 2.6 | wordcloud2 | 0.2.1 |
| wpm | 1.16.0 | wppi | 1.14.0 |
| Wrench | 1.24.0 | writexl | 1.5.4 |
| WriteXLS | 6.7.0 | wrswoR | 1.1.1 |
| xcore | 1.10.0 | xfun | 0.52 |
| xgboost | 1.7.11.1 | XINA | 1.24.0 |
| xmapbridge | 1.64.0 | XML | 3.99-0.18 |
| xml2 | 1.3.8 | xmlparsedata | 1.0.5 |
| xopen | 1.0.1 | xtable | 1.8-4 |
| XtraSNPlocs.Hsapiens.dbSNP144.GRCh37 | 0.99.12 | xts | 0.14.1 |
| XVector | 0.46.0 | yaImpute | 1.0-34.1 |
| yaml | 2.3.10 | yamss | 1.32.0 |
| yardstick | 1.3.2 | yeastCC | 1.46.0 |
| yeastExpData | 0.52.0 | yesno | 0.1.3 |
| yulab.utils | 0.2.0 | zCompositions | 1.5.0-4 |
| zeallot | 0.1.0 | zellkonverter | 1.16.0 |
| zFPKM | 1.28.0 | zigg | 0.0.2 |
| zinbwave | 1.28.0 | zip | 2.3.3 |
| zlibbioc | 1.52.0 | zoo | 1.8-14 |