RStudio Server
R: 4.5.0
rstudio-server: 2025.05.1-513
Release Notes
Added Bioconductor 3.21 packages, updated R to version 4.5.0, and applied security patches.
R packages
| package | version | package | version |
|---|---|---|---|
| a4 | 1.56.0 | a4Base | 1.56.0 |
| a4Classif | 1.56.0 | a4Core | 1.56.0 |
| a4Preproc | 1.56.0 | a4Reporting | 1.56.0 |
| ABarray | 1.76.0 | abind | 1.4-8 |
| abseqR | 1.26.0 | ABSSeq | 1.62.0 |
| acde | 1.38.0 | ACE | 1.26.0 |
| aCGH | 1.86.0 | ACME | 2.64.0 |
| ada | 2.0-5 | adabag | 5.1 |
| ADaCGH2 | 2.48.0 | ADAM | 1.24.0 |
| ADAMgui | 1.24.0 | additivityTests | 1.1-4.2 |
| adductData | 1.24.0 | adductomicsR | 1.24.0 |
| ade4 | 1.7-23 | adehabitatLT | 0.3.29 |
| adehabitatMA | 0.3.17 | ADGofTest | 0.3 |
| ADImpute | 1.18.0 | admisc | 0.38 |
| adSplit | 1.78.0 | adverSCarial | 1.6.0 |
| AffiXcan | 1.26.0 | affxparser | 1.80.0 |
| affy | 1.86.0 | affycomp | 1.84.0 |
| affyContam | 1.66.0 | affycoretools | 1.80.0 |
| affydata | 1.56.0 | affyILM | 1.60.0 |
| affyio | 1.78.0 | affylmGUI | 1.82.0 |
| affyPLM | 1.84.0 | AffyRNADegradation | 1.54.0 |
| AGDEX | 1.56.0 | aggregateBioVar | 1.18.0 |
| aggregation | 1.0.1 | agilp | 3.40.0 |
| AgiMicroRna | 2.58.0 | agricolae | 1.3-7 |
| AHMassBank | 1.8.0 | AhoCorasickTrie | 0.1.3 |
| AICcmodavg | 2.3-4 | AIMS | 1.40.0 |
| airpart | 1.16.0 | airway | 1.28.0 |
| akima | 0.6-3.6 | akmbiclust | 0.1.0 |
| alabama | 2023.1.0 | alabaster | 1.8.0 |
| alabaster.base | 1.8.1 | alabaster.bumpy | 1.8.1 |
| alabaster.files | 1.6.0 | alabaster.mae | 1.8.0 |
| alabaster.matrix | 1.8.0 | alabaster.ranges | 1.8.0 |
| alabaster.sce | 1.8.0 | alabaster.schemas | 1.8.0 |
| alabaster.se | 1.8.0 | alabaster.spatial | 1.8.0 |
| alabaster.string | 1.8.0 | alabaster.vcf | 1.8.0 |
| ALDEx2 | 1.40.0 | alevinQC | 1.24.0 |
| AlgDesign | 1.2.1.2 | ALL | 1.50.0 |
| AllelicImbalance | 1.46.1 | alluvial | 0.1-2 |
| AlphaBeta | 1.22.0 | AlpsNMR | 4.10.0 |
| altcdfenvs | 2.70.0 | amap | 0.8-20 |
| AMARETTO | 1.24.0 | AMOUNTAIN | 1.34.0 |
| amplican | 1.30.0 | analogue | 0.18.1 |
| Anaquin | 2.32.0 | ANCOMBC | 2.10.1 |
| AneuFinder | 1.34.0 | AneuFinderData | 1.36.0 |
| ANF | 1.30.0 | animalcules | 1.24.0 |
| animation | 2.8 | annaffy | 1.80.0 |
| anndata | 0.8.0 | annmap | 1.50.0 |
| annotate | 1.86.1 | AnnotationDbi | 1.70.0 |
| AnnotationFilter | 1.32.0 | AnnotationForge | 1.50.0 |
| AnnotationHub | 3.16.1 | AnnotationHubData | 1.38.0 |
| annotationTools | 1.82.0 | annotatr | 1.34.0 |
| anota | 1.56.0 | anota2seq | 1.30.0 |
| antiProfiles | 1.48.0 | AnVIL | 1.20.3 |
| AnVILBase | 1.2.0 | AnVILBilling | 1.18.0 |
| AnVILGCP | 1.2.0 | AnVILPublish | 1.18.0 |
| AnVILWorkflow | 1.8.0 | anytime | 0.3.12 |
| aod | 1.3.3 | aods3 | 0.5 |
| APAlyzer | 1.22.0 | apcluster | 1.4.13 |
| apComplex | 2.74.0 | ape | 5.8-1 |
| apeglm | 1.30.0 | APL | 1.12.0 |
| aplot | 0.2.8 | appreci8R | 1.26.0 |
| archive | 1.1.12 | argparse | 2.2.5 |
| aricode | 1.0.3 | arm | 1.14-4 |
| aroma.affymetrix | 3.2.3 | aroma.apd | 0.7.1 |
| aroma.core | 3.3.2 | aroma.light | 3.38.0 |
| ArrayExpress | 1.68.0 | arrayhelpers | 1.1-0 |
| arrayMvout | 1.66.0 | arrayQuality | 1.86.0 |
| arrayQualityMetrics | 3.64.0 | ARRmData | 1.44.0 |
| ARRmNormalization | 1.48.0 | arrow | 21.0.0.1 |
| artMS | 1.26.0 | arules | 1.7-11 |
| ASAFE | 1.34.0 | ASEB | 1.52.0 |
| ASGSCA | 1.42.0 | ash | 1.0-15 |
| ashr | 2.2-63 | ASICS | 2.24.0 |
| askpass | 1.2.1 | ASpli | 2.18.0 |
| assertive.base | 0.0-9 | assertive.files | 0.0-2 |
| assertive.numbers | 0.0-2 | assertive.sets | 0.0-3 |
| assertthat | 0.2.1 | AssessORF | 1.26.0 |
| ASSET | 2.26.0 | ASSIGN | 1.44.0 |
| assorthead | 1.2.0 | ASURAT | 1.12.0 |
| ATACCoGAPS | 1.4.0 | ATACseqQC | 1.32.0 |
| ATACseqTFEA | 1.10.0 | atena | 1.14.1 |
| atSNP | 1.24.0 | attempt | 0.3.1 |
| attract | 1.60.0 | AUCell | 1.30.1 |
| autonomics | 1.16.0 | available | 1.1.0 |
| AWFisher | 1.22.0 | aws | 2.5-6 |
| aws.s3 | 0.3.22 | aws.signature | 0.6.0 |
| awsMethods | 1.1-1 | awst | 1.16.0 |
| b64 | 0.1.7 | BaalChIP | 1.34.0 |
| babelgene | 22.9 | backbone | 2.1.5 |
| backports | 1.5.0 | bacon | 1.36.0 |
| BADER | 1.46.0 | BadRegionFinder | 1.36.0 |
| BAGS | 2.48.0 | ballgown | 2.40.0 |
| bambu | 3.10.1 | bamlss | 1.2-5 |
| bamsignals | 1.40.0 | BANDITS | 1.24.0 |
| bandle | 1.12.0 | banocc | 1.32.0 |
| barcodetrackR | 1.16.0 | base64 | 2.0.2 |
| base64enc | 0.1-3 | base64url | 1.4 |
| basecallQC | 1.32.0 | baseline | 1.3-7 |
| BaseSpaceR | 1.52.0 | Basic4Cseq | 1.44.0 |
| BASiCS | 2.20.0 | BASiCStan | 1.10.0 |
| BasicSTARRseq | 1.36.0 | basilisk | 1.20.0 |
| basilisk.utils | 1.20.0 | batchelor | 1.24.0 |
| BatchJobs | 1.9 | BatchQC | 2.4.0 |
| batchtools | 0.9.18 | BayesKnockdown | 1.34.0 |
| bayesm | 3.1-6 | BayesSpace | 1.18.4 |
| bayNorm | 1.26.0 | baySeq | 2.42.0 |
| BB | 2019.10-1 | BBCAnalyzer | 1.38.0 |
| BBmisc | 1.13 | bbmle | 1.0.25.1 |
| bbotk | 1.6.0 | bcellViper | 1.44.0 |
| BCRANK | 1.70.0 | bcSeq | 1.30.0 |
| bdsmatrix | 1.3-7 | beachmat | 2.24.0 |
| beachmat.hdf5 | 1.6.0 | beadarray | 2.58.0 |
| beadarraySNP | 1.68.0 | BeadDataPackR | 1.60.0 |
| beanplot | 1.3.1 | BEARscc | 1.22.0 |
| BEAT | 1.46.0 | BEclear | 2.24.0 |
| BEDASSLE | 1.6.1 | beer | 1.12.0 |
| beeswarm | 0.4.0 | bench | 1.1.4 |
| benchdamic | 1.14.3 | benchmarkme | 1.0.8 |
| benchmarkmeData | 1.0.4 | bestNormalize | 1.9.1 |
| betareg | 3.2-4 | bezier | 1.1.2 |
| BG2 | 1.8.0 | BgeeCall | 1.24.1 |
| BgeeDB | 2.34.0 | bgx | 1.68.3 |
| BH | 1.87.0-1 | BHC | 1.54.0 |
| BiasedUrn | 2.0.12 | bibtex | 0.5.1 |
| BicARE | 1.66.0 | biclust | 2.0.3.1 |
| BiFET | 1.28.0 | biganalytics | 1.1.22 |
| bigassertr | 0.1.7 | BiGGR | 1.44.0 |
| biglm | 0.9-3 | bigmelon | 1.34.0 |
| bigmemory | 4.6.4 | bigmemory.sri | 0.1.8 |
| bigparallelr | 0.3.2 | bigrquery | 1.5.1 |
| bigstatsr | 1.6.2 | billboarder | 0.5.0 |
| BindingSiteFinder | 2.6.0 | binom | 1.1-1.1 |
| binr | 1.1.1 | bioassayR | 1.46.0 |
| Biobase | 2.68.0 | biobroom | 1.40.0 |
| biobtreeR | 1.20.0 | bioCancer | 1.36.0 |
| BioCartaImage | 1.6.0 | BiocBaseUtils | 1.10.0 |
| BiocBook | 1.6.0 | BiocCheck | 1.44.2 |
| BiocFHIR | 1.10.0 | BiocFileCache | 2.16.1 |
| BiocGenerics | 0.54.0 | biocGraph | 1.70.0 |
| BiocHail | 1.7.1 | BiocHubsShiny | 1.8.1 |
| BiocIO | 1.18.0 | BiocManager | 1.30.26 |
| BiocNeighbors | 2.2.0 | BioCor | 1.32.0 |
| BiocParallel | 1.42.1 | BiocPkgTools | 1.26.2 |
| BiocSet | 1.22.0 | BiocSingular | 1.24.0 |
| BiocSklearn | 1.30.0 | BiocStyle | 2.36.0 |
| biocthis | 1.18.0 | BiocVersion | 3.21.1 |
| biocViews | 1.76.0 | BiocWorkflowTools | 1.34.0 |
| biodb | 1.16.0 | biodbChebi | 1.14.0 |
| biodbExpasy | 1.6.0 | biodbHmdb | 1.14.0 |
| biodbKegg | 1.8.0 | biodbLipidmaps | 1.8.0 |
| biodbMirbase | 1.5.0 | biodbNcbi | 1.12.0 |
| biodbNci | 1.12.0 | biodbUniprot | 1.14.0 |
| bioDist | 1.80.0 | biomaRt | 2.64.0 |
| biomartr | 1.0.7 | biomformat | 1.36.0 |
| BioMVCClass | 1.76.0 | biomvRCNS | 1.48.0 |
| BioNAR | 1.10.0 | BioNERO | 1.16.0 |
| BioNet | 1.68.0 | BioNetStat | 1.22.0 |
| BioQC | 1.36.0 | biosigner | 1.36.4 |
| Biostrings | 2.76.0 | BioTIP | 1.22.0 |
| biotmle | 1.32.1 | biovizBase | 1.56.0 |
| BiRewire | 3.40.0 | biscuiteer | 1.22.0 |
| biscuiteerData | 1.22.0 | BiSeq | 1.48.1 |
| bit | 4.6.0 | bit64 | 4.6.0-1 |
| bitops | 1.0-9 | biwt | 1.0.1 |
| blacksheepr | 1.22.0 | bladderbatch | 1.46.0 |
| BlandAltmanLeh | 0.3.1 | blaster | 1.0.7 |
| blima | 1.42.0 | BLMA | 1.32.0 |
| blme | 1.0-6 | blob | 1.2.4 |
| blockmodeling | 1.1.8 | BloodGen3Module | 1.16.0 |
| bluster | 1.18.0 | BMA | 3.18.20 |
| bmp | 0.3 | bnbc | 1.30.0 |
| bnem | 1.16.0 | bnlearn | 5.1 |
| bnstruct | 1.0.15 | BOBaFIT | 1.12.0 |
| bookdown | 0.44 | BoolNet | 2.1.9 |
| bootstrap | 2019.6 | borealis | 1.12.0 |
| BoutrosLab.plotting.general | 7.1.2 | BPRMeth | 1.34.0 |
| BRAIN | 1.54.0 | brainflowprobes | 1.16.0 |
| branchpointer | 1.34.0 | bread | 0.4.1 |
| breakpointR | 1.26.0 | breakpointRdata | 1.26.0 |
| breastCancerVDX | 1.46.0 | brendaDb | 1.22.0 |
| brew | 1.0-10 | BRGenomics | 1.14.1 |
| brglm | 0.7.2 | BridgeDbR | 2.18.0 |
| brio | 1.1.5 | BRISC | 1.0.6 |
| broom | 1.0.9 | broom.helpers | 1.21.0 |
| broom.mixed | 0.2.9.6 | BrowserViz | 2.30.0 |
| bs4Dash | 2.3.5 | BSDA | 1.2.2 |
| BSgenome | 1.76.0 | BSgenome.Celegans.UCSC.ce2 | 1.4.0 |
| BSgenome.Drerio.UCSC.danRer7 | 1.4.0 | BSgenome.Ecoli.NCBI.20080805 | 1.3.1000 |
| BSgenome.Hsapiens.1000genomes.hs37d5 | 0.99.1 | BSgenome.Hsapiens.NCBI.GRCh38 | 1.3.1000 |
| BSgenome.Hsapiens.UCSC.hg18 | 1.3.1000 | BSgenome.Hsapiens.UCSC.hg19 | 1.4.3 |
| BSgenome.Hsapiens.UCSC.hg38 | 1.4.5 | BSgenome.Mmusculus.UCSC.mm10 | 1.4.3 |
| BSgenome.Mmusculus.UCSC.mm9 | 1.4.0 | BSgenomeForge | 1.8.0 |
| bsicons | 0.1.2 | bslib | 0.9.0 |
| bsplus | 0.1.5 | bsseq | 1.44.1 |
| BubbleTree | 2.38.0 | BufferedMatrix | 1.72.0 |
| BufferedMatrixMethods | 1.72.0 | bugsigdbr | 1.14.3 |
| BUMHMM | 1.32.0 | bumphunter | 1.50.0 |
| BumpyMatrix | 1.16.0 | BUS | 1.64.0 |
| BUScorrect | 1.26.0 | BUSpaRse | 1.22.1 |
| BUSseq | 1.14.0 | butcher | 0.3.6 |
| BWStest | 0.2.3 | C50 | 0.2.0 |
| ca | 0.71.1 | cachem | 1.1.0 |
| CaDrA | 1.6.0 | CAEN | 1.16.0 |
| CAFE | 1.44.0 | CAGEfightR | 1.28.0 |
| cageminer | 1.14.0 | CAGEr | 2.14.0 |
| Cairo | 1.6-5 | calibrate | 1.7.7 |
| callr | 3.7.6 | calm | 1.22.0 |
| CAMERA | 1.64.0 | canceR | 1.42.0 |
| cancerclass | 1.52.0 | capushe | 1.1.2 |
| car | 3.1-3 | carData | 3.0-5 |
| cardelino | 1.10.0 | Cardinal | 3.10.0 |
| CardinalIO | 1.6.0 | cards | 0.7.0 |
| caret | 7.0-1 | caretEnsemble | 4.0.1 |
| CARNIVAL | 2.18.0 | casper | 2.42.0 |
| CATALYST | 1.32.0 | catdata | 1.2.4 |
| Category | 2.74.0 | categoryCompare | 1.52.0 |
| CatEncoders | 0.1.1 | caTools | 1.18.3 |
| CausalR | 1.40.0 | cba | 0.2-25 |
| cbaf | 1.30.0 | CBEA | 1.6.0 |
| cBioPortalData | 2.20.0 | CBNplot | 1.8.0 |
| cbpManager | 1.16.0 | ccaPP | 0.3.4 |
| ccdata | 1.34.0 | ccfindR | 1.28.0 |
| ccImpute | 1.10.0 | ccmap | 1.34.0 |
| CCP | 1.2 | CCPlotR | 1.6.0 |
| CCPROMISE | 1.34.0 | ccrepe | 1.44.0 |
| ccTensor | 1.0.3 | CDFt | 1.2 |
| CDI | 1.6.0 | celaref | 1.26.0 |
| celda | 1.24.0 | celestial | 1.4.6 |
| CellaRepertorium | 1.12.0 | CellBarcode | 1.14.0 |
| cellbaseR | 1.32.0 | CellBench | 1.24.0 |
| celldex | 1.18.0 | cellHTS2 | 2.66.0 |
| CelliD | 1.16.0 | cellity | 1.36.0 |
| CellMapper | 1.34.0 | cellmigRation | 1.16.0 |
| CellMixS | 1.24.0 | CellNOptR | 1.54.0 |
| cellranger | 1.1.0 | cellscape | 1.32.0 |
| CellScore | 1.27.0 | CellTrails | 1.26.0 |
| cellxgenedp | 1.12.1 | CEMiTool | 1.32.0 |
| censcyt | 1.16.0 | Cepo | 1.14.0 |
| ceRNAnetsim | 1.20.0 | CeTF | 1.20.0 |
| CexoR | 1.46.0 | CFAssay | 1.42.0 |
| cfdnakit | 1.6.0 | cfDNAPro | 1.14.0 |
| cfTools | 1.8.0 | cfToolsData | 1.6.0 |
| CGEN | 3.44.0 | CGHbase | 1.68.0 |
| CGHcall | 2.70.0 | cghMCR | 1.66.0 |
| CGHnormaliter | 1.62.0 | CGHregions | 1.66.0 |
| ChAMP | 2.38.0 | ChAMPdata | 2.40.0 |
| changepoint | 2.3 | changepoint.np | 1.0.5 |
| checkmate | 2.3.3 | ChemmineOB | 1.46.0 |
| ChemmineR | 3.60.0 | chemometrics | 1.4.4 |
| CHETAH | 1.24.0 | Chicago | 1.36.0 |
| chihaya | 1.8.0 | chimeraviz | 1.34.0 |
| ChIPanalyser | 1.30.0 | ChIPComp | 1.38.0 |
| chipenrich | 2.32.0 | chipenrich.data | 2.32.0 |
| ChIPexoQual | 1.32.0 | ChIPpeakAnno | 3.42.0 |
| ChIPQC | 1.44.0 | ChIPseeker | 1.44.0 |
| chipseq | 1.58.0 | ChIPseqR | 1.62.0 |
| ChIPsim | 1.62.0 | ChIPXpress | 1.52.0 |
| ChIPXpressData | 1.46.0 | chk | 0.10.0 |
| chopsticks | 1.74.0 | chromDraw | 2.38.0 |
| ChromHeatMap | 1.62.0 | chromhmmData | 0.99.2 |
| chromPlot | 1.36.0 | ChromSCape | 1.17.0 |
| chromstaR | 1.32.0 | chromstaRData | 1.34.0 |
| chromVAR | 1.30.1 | chron | 2.3-62 |
| CHRONOS | 1.36.0 | cicero | 1.26.0 |
| CIMICE | 1.16.0 | CINdex | 1.36.0 |
| circlize | 0.4.16 | circRNAprofiler | 1.22.1 |
| CircSeqAlignTk | 1.10.0 | CircStats | 0.2-7 |
| circular | 0.5-1 | cisPath | 1.47.0 |
| CiteFuse | 1.20.0 | Ckmeans.1d.dp | 4.3.5 |
| ClassifyR | 3.12.4 | classInt | 0.4-11 |
| cleanUpdTSeq | 1.46.0 | cleaver | 1.46.0 |
| clevRvis | 1.8.0 | cli | 3.6.5 |
| clippda | 1.58.0 | clipper | 1.48.0 |
| clipr | 0.8.0 | cliProfiler | 1.14.0 |
| cliqueMS | 1.22.0 | clisymbols | 1.2.0 |
| clock | 0.7.3 | Clomial | 1.44.0 |
| clst | 1.56.0 | clstutils | 1.56.0 |
| clue | 0.3-66 | CluMSID | 1.24.0 |
| clustComp | 1.36.0 | clusterCons | 1.2 |
| clusterCrit | 1.3.0 | clusterExperiment | 2.28.1 |
| ClusterJudge | 1.30.0 | clusterProfiler | 4.16.0 |
| ClusterR | 1.3.3 | clusterRepro | 0.9 |
| clusterSeq | 1.32.0 | ClusterSignificance | 1.36.0 |
| clusterSim | 0.51-5 | clusterStab | 1.80.0 |
| clustifyr | 1.20.0 | ClustIRR | 1.6.0 |
| clustree | 0.5.1 | clustvarsel | 2.3.5 |
| clv | 0.3-2.5 | clValid | 0.7 |
| CMA | 1.66.0 | cMAP | 1.15.1 |
| cMap2data | 1.44.0 | cmapR | 1.20.0 |
| cmdfun | 1.0.2 | cn.farms | 1.56.2 |
| cn.mops | 1.54.0 | CNAnorm | 1.54.0 |
| CNEr | 1.43.0 | CNORdt | 1.50.0 |
| CNORfeeder | 1.48.0 | CNORfuzzy | 1.50.0 |
| CNORode | 1.50.0 | CNTools | 1.64.0 |
| CNVfilteR | 1.22.0 | cnvGSA | 1.52.0 |
| CNViz | 1.16.0 | CNVMetrics | 1.12.0 |
| CNVPanelizer | 1.40.0 | CNVRanger | 1.24.2 |
| cobs | 1.3-9-1 | CoCiteStats | 1.80.0 |
| COCOA | 2.22.0 | coda | 0.19-4.1 |
| CodeDepends | 0.6.6 | codelink | 1.76.0 |
| CODEX | 1.40.0 | codingMatrices | 0.4.0 |
| CoGAPS | 3.28.0 | cogena | 1.42.0 |
| cogeqc | 1.12.0 | Cogito | 1.14.0 |
| coGPS | 1.52.0 | COHCAP | 1.48.0 |
| COHCAPanno | 1.44.0 | coin | 1.4-3 |
| cola | 2.14.0 | collapse | 2.1.3 |
| collections | 0.3.9 | colorRamps | 2.3.4 |
| colorspace | 2.1-1 | colourpicker | 1.3.0 |
| colourvalues | 0.3.9 | comapr | 1.12.0 |
| combi | 1.20.0 | combinat | 0.0-8 |
| coMET | 1.34.0 | coMethDMR | 1.12.0 |
| common | 1.1.3 | commonmark | 2.0.0 |
| compareGroups | 4.10.0 | COMPASS | 1.46.0 |
| compcodeR | 1.44.0 | compEpiTools | 1.42.0 |
| ComplexHeatmap | 2.24.1 | ComplexUpset | 1.3.3 |
| compositions | 2.0-9 | CompoundDb | 1.12.1 |
| CompQuadForm | 1.4.4 | ComPrAn | 1.16.0 |
| compSPOT | 1.6.0 | concaveman | 1.1.0 |
| conclust | 1.1 | concordexR | 1.8.0 |
| condformat | 0.10.1 | condiments | 1.16.0 |
| CONFESS | 1.36.0 | config | 0.3.2 |
| configr | 0.3.5 | confintr | 1.0.2 |
| conflicted | 1.2.0 | conicfit | 1.0.4 |
| consensus | 1.26.0 | ConsensusClusterPlus | 1.72.0 |
| consensusDE | 1.26.0 | consensusOV | 1.30.0 |
| consensusSeekeR | 1.36.0 | consICA | 2.6.0 |
| ConsRank | 2.1.5 | CONSTANd | 1.16.0 |
| contiBAIT | 1.30.0 | contrast | 0.24.2 |
| conumee | 1.42.0 | convert | 1.84.0 |
| coop | 0.6-3 | copa | 1.76.0 |
| copula | 1.1-6 | CopyNumberPlots | 1.24.0 |
| coRdon | 1.26.0 | CoreGx | 2.12.0 |
| Cormotif | 1.54.0 | corncob | 0.4.2 |
| coro | 1.1.0 | corpcor | 1.6.10 |
| corral | 1.18.0 | CORREP | 1.68.0 |
| corrgram | 1.14 | corrplot | 0.95 |
| coseq | 1.32.1 | CoSIA | 1.8.0 |
| COSMIC.67 | 1.44.0 | cosmiq | 1.42.0 |
| cosmosR | 1.16.0 | COSNet | 1.42.0 |
| COTAN | 2.8.5 | countrycode | 1.6.1 |
| countsimQC | 1.26.0 | covEB | 1.34.0 |
| CoverageView | 1.46.0 | covr | 3.6.4 |
| covRNA | 1.34.0 | cowplot | 1.2.0 |
| cp4p | 0.3.6 | cplm | 0.7-12.1 |
| cpp11 | 0.5.2 | cpp11bigwig | 0.1.2 |
| cpvSNP | 1.40.0 | cqn | 1.54.0 |
| crayon | 1.5.3 | credentials | 2.0.2 |
| CRImage | 1.56.0 | crisprBase | 1.12.0 |
| crisprBowtie | 1.12.0 | crisprBwa | 1.12.0 |
| crisprDesign | 1.10.0 | crisprScore | 1.12.0 |
| crisprScoreData | 1.12.0 | CRISPRseek | 1.48.0 |
| CrispRVariants | 1.36.0 | crisprVerse | 1.10.0 |
| crisprViz | 1.10.0 | crlmm | 1.66.0 |
| crmn | 0.0.21 | crossmeta | 1.28.0 |
| crosstalk | 1.2.2 | crul | 1.6.0 |
| CSAR | 1.60.0 | csaw | 1.42.0 |
| csdR | 1.14.0 | CSSQ | 1.20.0 |
| ctc | 1.82.0 | CTdata | 1.8.0 |
| CTDquerier | 2.16.0 | cTRAP | 1.26.0 |
| ctsGE | 1.34.0 | CTSV | 1.10.0 |
| cubature | 2.1.4 | Cubist | 0.5.0 |
| cummeRbund | 2.50.0 | CuratedAtlasQueryR | 1.6.0 |
| curatedTCGAData | 1.30.0 | curl | 7.0.0 |
| customCMPdb | 1.18.0 | customProDB | 1.48.0 |
| cvar | 0.5 | cvAUC | 1.1.4 |
| cvTools | 0.3.3 | CVXR | 1.0-15 |
| cyanoFilter | 1.16.0 | cycle | 1.62.0 |
| cyclocomp | 1.1.1 | cydar | 1.32.1 |
| CytoDx | 1.28.0 | CyTOFpower | 1.14.0 |
| cytofQC | 1.8.0 | CytoGLMM | 1.16.1 |
| cytoKernel | 1.14.0 | cytolib | 2.20.0 |
| cytomapper | 1.20.0 | cytoMEM | 1.12.0 |
| cytometree | 2.0.6 | CytoML | 2.20.0 |
| CytoPipeline | 1.8.0 | CytoPipelineGUI | 1.6.0 |
| cytoviewer | 1.8.0 | dada2 | 1.36.0 |
| dagLogo | 1.46.0 | daMA | 1.80.0 |
| DAMEfinder | 1.20.0 | DaMiRseq | 2.20.0 |
| DAPAR | 1.40.0 | DAPARdata | 1.38.0 |
| DART | 1.56.0 | dashboardthemes | 1.1.6 |
| data.table | 1.17.8 | data.tree | 1.2.0 |
| datamods | 1.5.3 | DataVisualizations | 1.3.5 |
| datawizard | 1.2.0 | DBI | 1.2.3 |
| dbplyr | 2.5.0 | dbscan | 1.2.3 |
| dcanr | 1.24.0 | DCATS | 1.6.0 |
| dce | 1.13.0 | dcGSA | 1.36.0 |
| ddCt | 1.64.0 | ddPCRclust | 1.28.0 |
| DDRTree | 0.1.5 | dearseq | 1.20.0 |
| debCAM | 1.26.0 | debrowser | 1.36.0 |
| DECIPHER | 3.4.0 | decompTumor2Sig | 2.24.0 |
| DeconRNASeq | 1.50.0 | deconstructSigs | 1.8.0 |
| decontam | 1.28.0 | decontX | 1.6.0 |
| deconvR | 1.14.2 | decoupleR | 2.14.0 |
| DeepPINCS | 1.16.0 | deepSNV | 1.54.0 |
| DEFormats | 1.36.0 | DegNorm | 1.18.0 |
| DEGraph | 1.60.0 | DEGreport | 1.44.0 |
| DEGseq | 1.62.0 | Delaporte | 8.4.2 |
| DelayedArray | 0.34.1 | DelayedDataFrame | 1.24.0 |
| DelayedMatrixStats | 1.30.0 | DelayedRandomArray | 1.16.0 |
| DelayedTensor | 1.14.0 | deldir | 2.0-4 |
| DELocal | 1.8.0 | deltaCaptureC | 1.22.0 |
| deltaGseg | 1.48.0 | DeMAND | 1.38.0 |
| DeMixT | 1.24.0 | demuxmix | 1.10.0 |
| demuxSNP | 1.6.0 | dendextend | 1.19.1 |
| densEstBayes | 1.0-2.2 | densvis | 1.18.0 |
| DEoptimR | 1.1-4 | DEP | 1.30.0 |
| DepecheR | 1.24.0 | DepInfeR | 1.12.0 |
| depmap | 1.22.0 | depmixS4 | 1.5-1 |
| DEqMS | 1.26.0 | derfinder | 1.42.0 |
| derfinderHelper | 1.42.0 | derfinderPlot | 1.42.0 |
| Deriv | 4.2.0 | desc | 1.4.3 |
| DEScan2 | 1.28.0 | DescTools | 0.99.60 |
| DESeq2 | 1.48.1 | DEsingle | 1.28.0 |
| deSolve | 1.40 | DESpace | 2.0.0 |
| destiny | 3.22.0 | DEsubs | 1.34.0 |
| detectseparation | 0.3 | devtools | 2.4.5 |
| DEWSeq | 1.22.0 | DExMA | 1.16.0 |
| DExMAdata | 1.16.0 | DEXSeq | 1.54.1 |
| DFP | 1.66.0 | DGEobj | 1.1.2 |
| DGEobj.utils | 1.0.6 | dgof | 1.5.1 |
| diagram | 1.6.5 | DiagrammeR | 1.0.11 |
| DIAlignR | 2.10.0 | diceR | 3.1.0 |
| dichromat | 2.0-0.1 | DiffBind | 3.18.0 |
| diffcoexp | 1.28.0 | DiffCorr | 0.4.5 |
| diffcyt | 1.28.0 | DifferentialRegulation | 2.6.0 |
| diffGeneAnalysis | 1.90.0 | diffHic | 1.40.0 |
| DiffLogo | 2.32.0 | diffobj | 0.3.6 |
| diffr | 0.3.0 | diffuStats | 1.28.0 |
| diffUTR | 1.16.0 | digest | 0.6.37 |
| diggit | 1.40.0 | Dino | 1.14.0 |
| diptest | 0.77-2 | dir.expiry | 1.16.0 |
| directlabels | 2025.6.24 | Director | 1.34.0 |
| directPA | 1.5.1 | DirichletMultinomial | 1.50.0 |
| DirichletReg | 0.7-2 | dirmult | 0.1.3-5 |
| discordant | 1.32.0 | DiscoRhythm | 1.24.0 |
| distances | 0.1.12 | distillery | 1.2-2 |
| distinct | 1.20.0 | distr | 2.9.7 |
| distrEx | 2.9.6 | distributional | 0.5.0 |
| distributions3 | 0.2.2 | dittoSeq | 1.20.0 |
| divergence | 1.24.0 | dixonTest | 1.0.4 |
| dks | 1.54.0 | DMCFB | 1.22.1 |
| DMCHMM | 1.30.1 | dml | 1.1.0 |
| DMRcaller | 1.40.0 | DMRcate | 3.4.0 |
| DMRScan | 1.30.0 | dmrseq | 1.28.0 |
| DMwR2 | 0.0.2 | DNABarcodeCompatibility | 1.24.0 |
| DNABarcodes | 1.38.0 | DNAcopy | 1.82.0 |
| DNAfusion | 1.10.0 | DNAshapeR | 1.36.0 |
| dnet | 1.1.7 | doBy | 4.7.0 |
| docopt | 0.7.2 | doFuture | 1.1.2 |
| doMC | 1.3.8 | DominoEffect | 1.28.0 |
| doParallel | 1.0.17 | doppelgangR | 1.36.1 |
| doRNG | 1.8.6.2 | dorothea | 1.20.0 |
| Doscheda | 1.30.0 | DOSE | 4.2.0 |
| doseR | 1.24.0 | doSNOW | 1.0.20 |
| dotCall64 | 1.2 | downlit | 0.4.4 |
| downloader | 0.4.1 | downloadthis | 0.5.0 |
| dplyr | 1.1.4 | dqrng | 0.4.1 |
| drawer | 0.2.0.1 | drawProteins | 1.28.0 |
| drc | 3.0-1 | dreamlet | 1.6.0 |
| DrImpute | 1.0 | DRIMSeq | 1.36.0 |
| DriverNet | 1.48.0 | DropletUtils | 1.28.1 |
| drtmle | 1.1.2 | drugTargetInteractions | 1.16.0 |
| DrugVsDisease | 2.50.0 | DrugVsDiseasedata | 1.44.0 |
| DSS | 2.56.0 | dStruct | 1.14.0 |
| DT | 0.33 | DTA | 2.54.0 |
| dtangle | 2.0.9 | dtplyr | 1.3.1 |
| dtt | 0.1-2.1 | dtw | 1.23-1 |
| duckdb | 1.3.2 | Dune | 1.20.0 |
| dunn.test | 1.3.6 | dupRadar | 1.38.0 |
| dyebias | 1.68.0 | dynamicTreeCut | 1.63-1 |
| DynDoc | 1.86.0 | e1071 | 1.7-16 |
| earth | 5.3.4 | easier | 1.14.0 |
| easierData | 1.14.0 | easycsv | 1.0.8 |
| easylift | 1.6.0 | easyPubMed | 3.1.6 |
| easyreporting | 1.20.0 | easyRNASeq | 2.44.0 |
| EBarrays | 2.72.0 | EBcoexpress | 1.52.0 |
| EBImage | 4.50.0 | EBSEA | 1.36.0 |
| EBSeq | 2.6.0 | EBSeqHMM | 1.35.0 |
| echarts4r | 0.4.5 | ecolitk | 1.80.0 |
| ECOSolveR | 0.5.5 | ecp | 3.1.6 |
| Ecume | 0.9.2 | EDASeq | 2.42.0 |
| edge | 2.40.0 | edgeR | 4.6.3 |
| EDIRquery | 1.8.0 | eds | 1.10.0 |
| effsize | 0.8.1 | EGAD | 1.36.0 |
| egg | 0.4.5 | EGSEA | 1.36.0 |
| EGSEAdata | 1.36.0 | einsum | 0.1.2 |
| eiR | 1.48.0 | eisaR | 1.20.0 |
| elasticnet | 1.3 | elitism | 1.1.1 |
| ellipse | 0.5.0 | ellipsis | 0.3.2 |
| ELMER | 2.32.0 | ELMER.data | 2.32.0 |
| emdbook | 1.3.14 | emdist | 0.3-3 |
| EMDomics | 2.38.0 | emmeans | 1.11.2 |
| EmpiricalBrownsMethod | 1.36.0 | energy | 1.7-12 |
| english | 1.2-6 | EnhancedVolcano | 1.26.0 |
| enhancerHomologSearch | 1.14.0 | EnMCB | 1.20.0 |
| ENmix | 1.44.3 | EnrichedHeatmap | 1.38.0 |
| EnrichmentBrowser | 2.38.0 | enrichplot | 1.28.4 |
| enrichR | 3.4 | enrichTF | 1.18.0 |
| enrichViewNet | 1.6.1 | EnsDb.Hsapiens.v75 | 2.99.0 |
| EnsDb.Hsapiens.v79 | 2.99.0 | EnsDb.Hsapiens.v86 | 2.99.0 |
| EnsDb.Mmusculus.v79 | 2.99.0 | ensembldb | 2.32.0 |
| ensemblVEP | 1.44.0 | ensurer | 1.1 |
| entropy | 1.3.2 | enviPat | 2.6 |
| EnvStats | 3.1.0 | epialleleR | 1.16.0 |
| EpiCompare | 1.12.0 | epidecodeR | 1.16.0 |
| EpiDISH | 2.24.0 | epigenomix | 1.48.1 |
| epigraHMM | 1.16.0 | EpiMix | 1.10.0 |
| EpiMix.data | 1.10.0 | epimutacions | 1.12.0 |
| epimutacionsData | 1.12.0 | epiNEM | 1.32.0 |
| epiR | 2.0.85 | epistack | 1.14.0 |
| epistasisGA | 1.10.0 | EpiTxDb | 1.20.0 |
| epivizr | 2.38.0 | epivizrChart | 1.30.0 |
| epivizrData | 1.36.0 | epivizrServer | 1.36.0 |
| epivizrStandalone | 1.36.0 | erccdashboard | 1.42.0 |
| erma | 1.24.1 | ERSSA | 1.26.0 |
| esATAC | 1.30.0 | escape | 2.4.0 |
| escheR | 1.8.0 | esetVis | 1.34.0 |
| estimability | 1.5.1 | etrunct | 0.1 |
| eudysbiome | 1.38.0 | eulerr | 7.0.2 |
| eva | 0.2.6 | evaluate | 1.0.5 |
| evaluomeR | 1.24.0 | evd | 2.3-7.1 |
| EventPointer | 3.16.0 | evmix | 2.12 |
| EWCE | 1.16.0 | ewceData | 1.16.0 |
| Exact | 3.3 | exactRankTests | 0.8-35 |
| excelR | 0.4.0 | ExCluster | 1.26.0 |
| ExiMiR | 2.50.0 | exomeCopy | 1.48.0 |
| exomePeak2 | 1.14.3 | ExperimentHub | 2.16.1 |
| ExperimentHubData | 1.34.0 | ExperimentSubset | 1.18.1 |
| ExploreModelMatrix | 1.20.0 | expm | 1.0-0 |
| ExpressionAtlas | 2.0.0 | ExtDist | 0.7-3 |
| extraChIPs | 1.12.0 | extraDistr | 1.10.0 |
| extrafont | 0.19 | extrafontdb | 1.0 |
| extRemes | 2.2-1 | EZtune | 3.1.1 |
| faahKO | 1.48.1 | fabia | 2.54.0 |
| fabricatr | 1.0.2 | factDesign | 1.84.0 |
| factoextra | 1.0.7 | FactoMineR | 2.12 |
| factR | 1.10.0 | FamAgg | 1.36.0 |
| famat | 1.18.0 | fANCOVA | 0.6-1 |
| fansi | 1.0.6 | farver | 2.1.2 |
| fastcluster | 1.3.0 | fastDummies | 1.7.5 |
| fastICA | 1.2-7 | fastLiquidAssociation | 1.44.0 |
| fastmap | 1.2.0 | fastmatch | 1.1-6 |
| FastqCleaner | 1.26.0 | fastreeR | 1.12.5 |
| fastseg | 1.54.0 | fauxpas | 0.5.2 |
| fBasics | 4041.97 | fCCAC | 1.34.0 |
| fCI | 1.38.0 | FCPS | 1.3.4 |
| fcScan | 1.22.0 | fda | 6.3.0 |
| FDb.InfiniumMethylation.hg19 | 2.2.0 | fdrame | 1.80.0 |
| fdrtool | 1.2.18 | fds | 1.8 |
| FEAST | 1.16.0 | FeatSeekR | 1.8.0 |
| feature | 1.2.15 | fedup | 1.16.0 |
| FELLA | 1.28.0 | fenr | 1.6.1 |
| ff | 4.5.2 | ffpe | 1.52.0 |
| fftw | 1.0-9 | fftwtools | 0.9-11 |
| fGarch | 4033.92 | fgga | 1.16.0 |
| FGNet | 3.42.0 | fgsea | 1.34.2 |
| fields | 16.3.1 | filehash | 2.4-6 |
| filelock | 1.0.3 | filematrix | 1.3 |
| fillpattern | 1.0.2 | FilterFFPE | 1.18.0 |
| FindIT2 | 1.14.0 | findpython | 1.0.9 |
| fingerprint | 3.5.7 | FIs | 1.36.0 |
| FISHalyseR | 1.42.0 | fishpond | 2.14.0 |
| fission | 1.28.0 | fit.models | 0.64 |
| fitdistrplus | 1.2-4 | FitHiC | 1.34.0 |
| flagme | 1.64.0 | FLAMES | 2.2.0 |
| flashClust | 1.01-2 | flatxml | 0.1.1 |
| flexclust | 1.5.0 | flexdashboard | 0.6.2 |
| flexmix | 2.3-20 | FlexParamCurve | 1.5-7 |
| flextable | 0.9.10 | float | 0.3-3 |
| flock | 0.7 | flowAI | 1.38.0 |
| flowBeads | 1.46.0 | flowBin | 1.44.0 |
| flowcatchR | 1.42.0 | flowCHIC | 1.42.0 |
| flowClean | 1.46.0 | flowClust | 3.46.0 |
| flowCore | 2.20.0 | flowCut | 1.18.0 |
| flowCyBar | 1.44.0 | flowDensity | 1.42.0 |
| flowFP | 1.66.0 | flowGate | 1.8.0 |
| flowGraph | 1.16.0 | flowMatch | 1.44.0 |
| flowMeans | 1.68.0 | flowMerge | 2.56.0 |
| flowPeaks | 1.54.0 | flowPloidy | 1.34.0 |
| flowPlots | 1.56.0 | FlowSOM | 2.16.0 |
| FlowSorted.Blood.450k | 1.46.0 | flowSpecs | 1.22.0 |
| flowStats | 4.20.0 | flowTime | 1.32.0 |
| flowTrans | 1.60.0 | flowViz | 1.72.0 |
| flowVS | 1.40.0 | flowWorkspace | 4.20.0 |
| fmcsR | 1.50.0 | FME | 1.3.6.4 |
| fmrs | 1.18.0 | fmsb | 0.7.6 |
| FMStable | 0.1-4 | FNN | 1.1.4.1 |
| fobitools | 1.16.0 | fontawesome | 0.5.3 |
| fontBitstreamVera | 0.1.1 | fontLiberation | 0.1.0 |
| fontquiver | 0.2.1 | forcats | 1.0.0 |
| foreach | 1.5.2 | forecast | 8.24.0 |
| forestplot | 3.1.7 | formatR | 1.14 |
| formattable | 0.2.1 | Formula | 1.2-5 |
| formula.tools | 1.7.1 | fpc | 2.2-13 |
| fracdiff | 1.5-3 | fractional | 0.1.3 |
| FRASER | 2.4.3 | frenchFISH | 1.20.0 |
| FreqProf | 0.0.1 | fresh | 0.2.1 |
| FRGEpistasis | 1.44.0 | frma | 1.60.0 |
| frmaTools | 1.60.0 | fs | 1.6.6 |
| FSA | 0.10.0 | FSelector | 0.34 |
| fst | 0.9.8 | fstcore | 0.10.0 |
| FunChIP | 1.28.0 | funtooNorm | 1.32.0 |
| furrr | 0.3.1 | FuseSOM | 1.10.0 |
| futile.logger | 1.4.3 | futile.options | 1.0.1 |
| future | 1.67.0 | future.apply | 1.20.0 |
| fuzzyjoin | 0.1.6.1 | GA | 3.2.4 |
| GA4GHclient | 1.32.0 | GA4GHshiny | 1.30.0 |
| gaga | 2.54.0 | gage | 2.58.0 |
| gaggle | 1.70.0 | gam | 1.22-6 |
| gamlss | 5.5-0 | gamlss.data | 6.0-6 |
| gamlss.dist | 6.1-1 | gap | 1.6 |
| gap.datasets | 0.0.6 | GAprediction | 1.34.0 |
| garfield | 1.36.0 | gargle | 1.5.2 |
| GARS | 1.28.0 | GateFinder | 1.28.0 |
| gatom | 1.6.0 | gbm | 2.2.2 |
| GBScleanR | 2.2.0 | gbutils | 0.5 |
| gcapc | 1.32.0 | gcatest | 2.8.0 |
| gclus | 1.3.3 | gCrisprTools | 2.14.0 |
| gcrma | 2.80.0 | gcspikelite | 1.46.0 |
| gdata | 3.0.1 | GDCRNATools | 1.28.0 |
| gDNAx | 1.6.1 | gDR | 1.6.0 |
| gDRcore | 1.6.0 | gDRimport | 1.6.0 |
| gDRstyle | 1.6.0 | gDRutils | 1.6.0 |
| GDSArray | 1.28.0 | gdsfmt | 1.44.1 |
| gdtools | 0.4.3 | geeM | 0.10.1 |
| geepack | 1.3.12 | geigen | 2.3 |
| GEM | 1.34.0 | gemini | 1.22.0 |
| gemma.R | 3.4.5 | genalg | 0.2.1 |
| genArise | 1.84.0 | geneAttribution | 1.34.0 |
| GeneBreak | 1.38.0 | geneClassifiers | 1.32.0 |
| GeneExpressionSignature | 1.54.0 | genefilter | 1.90.0 |
| genefu | 2.40.0 | GeneGA | 1.58.0 |
| GeneGeneInteR | 1.33.0 | geneLenDataBase | 1.44.0 |
| GeneMeta | 1.80.0 | GeneNet | 1.2.17 |
| GeneNetworkBuilder | 1.50.0 | GeneOverlap | 1.44.0 |
| geneplast | 1.34.0 | geneplotter | 1.86.0 |
| geneRecommender | 1.80.0 | GeneRegionScan | 1.64.0 |
| generics | 0.1.4 | geneRxCluster | 1.44.0 |
| GeneSelectMMD | 2.52.0 | GENESIS | 2.38.0 |
| GeneStructureTools | 1.28.0 | geNetClassifier | 1.48.0 |
| genetics | 1.3.8.1.3 | GeneticsPed | 1.70.0 |
| GeneTonic | 3.2.0 | geneXtendeR | 1.34.0 |
| GENIE3 | 1.30.0 | genieclust | 1.2.0 |
| genlasso | 1.6.1 | GENLIB | 1.1.10 |
| genoCN | 1.58.0 | genomation | 1.40.1 |
| GenomAutomorphism | 1.10.0 | GenomeInfoDb | 1.44.2 |
| GenomeInfoDbData | 1.2.14 | genomeIntervals | 1.64.0 |
| genomes | 3.38.0 | GenomicAlignments | 1.44.0 |
| GenomicDataCommons | 1.32.1 | GenomicDistributions | 1.16.1 |
| GenomicFeatures | 1.60.0 | GenomicFiles | 1.44.1 |
| genomicInstability | 1.14.0 | GenomicInteractionNodes | 1.12.0 |
| GenomicInteractions | 1.42.0 | GenomicOZone | 1.22.0 |
| GenomicRanges | 1.60.0 | GenomicScores | 2.20.2 |
| GenomicState | 0.99.16 | GenomicSuperSignature | 1.16.1 |
| GenomicTools.fileHandler | 0.1.5.9 | GenomicTuples | 1.42.0 |
| GenProSeq | 1.12.0 | GenSA | 1.1.14.1 |
| GenVisR | 1.39.0 | GeoDiff | 1.14.0 |
| GEOexplorer | 1.14.0 | GEOfastq | 1.16.0 |
| GEOmetadb | 1.70.0 | geometries | 0.2.4 |
| geometry | 0.5.2 | GeomxTools | 3.12.0 |
| GEOquery | 2.76.0 | geosphere | 1.5-20 |
| GEOsubmission | 1.60.0 | GeoTcgaData | 2.8.0 |
| gep2pep | 1.28.0 | gert | 2.1.5 |
| gespeR | 1.34.0 | getDEE2 | 1.18.0 |
| getopt | 1.20.4 | GetoptLong | 1.0.5 |
| getPass | 0.2-4 | geva | 1.16.0 |
| GEWIST | 1.52.0 | gfonts | 0.2.0 |
| gg4way | 1.6.1 | ggalluvial | 0.12.5 |
| GGally | 2.4.0 | ggalt | 0.4.0 |
| gganimate | 1.0.10 | ggbeeswarm | 0.7.2 |
| ggbio | 1.56.0 | ggbump | 0.1.0 |
| ggcorrplot | 0.1.4.1 | ggcyto | 1.36.0 |
| ggdendro | 0.2.0 | ggdist | 3.3.3 |
| ggExtra | 0.10.1 | ggfittext | 0.10.2 |
| ggforce | 0.5.0 | ggformula | 0.12.2 |
| ggfortify | 0.4.19 | ggfun | 0.2.0 |
| gggenes | 0.5.1 | ggh4x | 0.3.1 |
| gghalves | 0.1.4 | gghighlight | 0.5.0 |
| ggimage | 0.3.4 | ggiraph | 0.9.0 |
| ggkegg | 1.6.0 | ggm | 2.5.2 |
| ggmanh | 1.12.0 | ggmcmc | 1.5.1.1 |
| ggmsa | 1.14.1 | ggnetwork | 0.5.13 |
| ggnewscale | 0.5.2 | GGPA | 1.20.0 |
| ggplot.multistats | 1.0.1 | ggplot2 | 3.5.2 |
| ggplotify | 0.1.2 | ggpmisc | 0.6.2 |
| ggpointdensity | 0.2.0 | ggpp | 0.5.9 |
| ggprism | 1.0.7 | ggpubr | 0.6.1 |
| ggraph | 2.2.2 | ggrastr | 1.0.2 |
| ggrepel | 0.9.6 | ggridges | 0.5.7 |
| ggsc | 1.6.1 | ggsci | 3.2.0 |
| ggseqlogo | 0.2 | ggside | 0.3.2 |
| ggsignif | 0.6.4 | ggspavis | 1.14.3 |
| ggstar | 1.0.4 | ggstats | 0.10.0 |
| ggtangle | 0.0.7 | ggtext | 0.1.2 |
| ggthemes | 5.1.0 | ggtree | 3.16.3 |
| ggtreeDendro | 1.10.0 | ggtreeExtra | 1.18.0 |
| ggupset | 0.4.1 | ggvenn | 0.1.10 |
| ggvis | 0.4.9 | ggwordcloud | 0.6.2 |
| gh | 1.5.0 | GIGSEA | 1.26.0 |
| girafe | 1.60.0 | GISPA | 1.26.0 |
| gistr | 0.9.0 | git2r | 0.36.2 |
| gitcreds | 0.1.2 | GLAD | 2.72.0 |
| GladiaTOX | 1.24.1 | glasso | 1.11 |
| gld | 2.6.7 | Glimma | 2.18.0 |
| glm2 | 1.2.1 | glmGamPoi | 1.20.0 |
| glmmTMB | 1.1.12 | glmnet | 4.1-10 |
| glmpca | 0.2.0 | glmSparseNet | 1.26.0 |
| GlobalAncova | 4.26.0 | GlobalOptions | 0.1.2 |
| globals | 0.18.0 | globalSeq | 1.36.0 |
| globaltest | 5.62.0 | GloScope | 1.6.0 |
| glue | 1.8.0 | gmapR | 1.48.0 |
| GmicR | 1.22.0 | gmm | 1.9-1 |
| gmodels | 2.19.1 | gmoviz | 1.20.0 |
| gmp | 0.7-5 | GMRP | 1.36.0 |
| GNET2 | 1.24.0 | gnm | 1.1-5 |
| GNOSIS | 1.6.0 | GO.db | 3.21.0 |
| GOexpress | 1.42.0 | GoFKernel | 2.1-3 |
| goftest | 1.2-3 | GOfuncR | 1.28.0 |
| golem | 0.5.1 | googleAuthR | 2.0.2 |
| googledrive | 2.1.1 | googlesheets4 | 1.1.1 |
| googleVis | 0.7.3 | GOpro | 1.34.0 |
| goProfiles | 1.70.0 | GOSemSim | 2.34.0 |
| goseq | 1.60.0 | GOSim | 1.40.0 |
| goSorensen | 1.10.0 | goSTAG | 1.32.0 |
| GOstats | 2.74.0 | GOsummaries | 2.37.0 |
| GOTHiC | 1.44.0 | goTools | 1.82.0 |
| gower | 1.0.2 | GPA | 1.20.0 |
| GPArotation | 2025.3-1 | gplots | 3.2.0 |
| gpls | 1.80.0 | gProfileR | 0.7.0 |
| gprofiler2 | 0.2.3 | gpuMagic | 1.23.0 |
| gRain | 1.4.5 | GRaNIE | 1.12.0 |
| granulator | 1.16.0 | graper | 1.24.2 |
| graph | 1.86.0 | GraphAlignment | 1.72.0 |
| GraphAT | 1.80.0 | graphite | 1.54.0 |
| graphlayouts | 1.2.2 | GraphPAC | 1.44.0 |
| gRbase | 2.0.3 | GRENITS | 1.60.0 |
| GreyListChIP | 1.40.0 | gridBase | 0.4-7 |
| gridExtra | 2.3 | gridGraphics | 0.5-1 |
| gridSVG | 1.7-6 | gridtext | 0.1.5 |
| grImport | 0.9-7 | GRmetrics | 1.34.0 |
| groHMM | 1.42.0 | grr | 0.9.5 |
| GSA | 1.03.3 | GSALightning | 1.36.0 |
| GSAR | 1.42.0 | GSCA | 2.38.0 |
| gscreend | 1.22.0 | GSEABase | 1.70.0 |
| GSEABenchmarkeR | 1.28.1 | GSEAlm | 1.68.0 |
| GSEAmining | 1.18.0 | gsean | 1.28.0 |
| GSgalgoR | 1.18.0 | gsignal | 0.3-7 |
| gsl | 2.1-8 | gsmoothr | 0.1.7 |
| gson | 0.1.0 | GSReg | 1.42.0 |
| GSRI | 2.56.0 | gss | 2.2-9 |
| gstat | 2.1-4 | gsubfn | 0.7 |
| GSVA | 2.2.0 | GSVAdata | 1.44.0 |
| gtable | 0.3.6 | gtools | 3.9.5 |
| gtrellis | 1.40.0 | GUIDEseq | 1.38.0 |
| Guitar | 2.24.0 | GUniFrac | 1.9 |
| Gviz | 1.52.0 | GWAS.BAYES | 1.18.0 |
| gwascat | 2.40.0 | GWASExactHW | 1.2 |
| GWASTools | 1.54.0 | gwasurvivr | 1.26.0 |
| GWENA | 1.18.0 | gypsum | 1.4.0 |
| h5mread | 1.0.1 | h5vc | 2.42.0 |
| h5vcData | 2.28.0 | hapFabia | 1.50.0 |
| hardhat | 1.4.2 | HardyWeinberg | 1.7.8 |
| Harman | 1.36.0 | harmonicmeanp | 3.0.1 |
| HarmonizR | 1.6.0 | harmony | 1.2.3 |
| Harshlight | 1.79.0 | hash | 2.2.6.3 |
| haven | 2.5.5 | hca | 1.16.0 |
| HDCI | 1.0-2 | HDF5Array | 1.36.0 |
| hdf5r | 1.3.12 | HDInterval | 0.2.4 |
| HDO.db | 1.0.0 | hdrcde | 3.4 |
| HDTD | 1.42.0 | heatmap3 | 1.1.9 |
| heatmaply | 1.6.0 | heatmaps | 1.32.0 |
| Heatplus | 3.16.0 | HelloRanges | 1.34.0 |
| HELP | 1.66.0 | HEM | 1.80.0 |
| here | 1.0.1 | hermes | 1.12.1 |
| HERON | 1.6.1 | Herper | 1.18.0 |
| hexbin | 1.28.5 | HGC | 1.16.0 |
| HGNChelper | 0.8.15 | hgu133a.db | 3.13.0 |
| hgu133a2.db | 3.13.0 | hgu133plus2.db | 3.13.0 |
| hgu95a.db | 3.13.0 | hgu95av2.db | 3.13.0 |
| HH | 3.1-53 | hiAnnotator | 1.42.0 |
| HIBAG | 1.44.0 | HiCBricks | 1.26.0 |
| HiCcompare | 1.30.0 | HiCDCPlus | 1.16.0 |
| HiCDOC | 1.10.2 | HiCExperiment | 1.8.0 |
| HiContacts | 1.10.0 | HiCool | 1.8.0 |
| hicVennDiagram | 1.6.0 | HiddenMarkov | 1.8-14 |
| hierGWAS | 1.38.0 | hierinf | 1.26.0 |
| highcharter | 0.9.4 | highr | 0.11 |
| HilbertCurve | 2.2.0 | HilbertVis | 1.66.1 |
| HilbertVisGUI | 1.66.1 | HiLDA | 1.22.0 |
| hipathia | 3.8.0 | HIPPO | 1.20.0 |
| hiReadsProcessor | 1.44.0 | HIREewas | 1.26.0 |
| HiTC | 1.52.0 | HiveR | 0.4.0 |
| hmdbQuery | 1.28.0 | Hmisc | 5.2-3 |
| HMMcopy | 1.50.0 | hms | 1.1.3 |
| Homo.sapiens | 1.3.1 | homologene | 1.4.68.19.3.27 |
| hoodscanR | 1.6.0 | hopach | 2.68.0 |
| howmany | 0.3-1 | HPAanalyze | 1.26.1 |
| hpar | 1.50.0 | HPiP | 1.14.0 |
| hrbrthemes | 0.8.7 | HSMMSingleCell | 1.28.0 |
| htm2txt | 2.2.2 | htmlTable | 2.4.3 |
| htmltools | 0.5.8.1 | HTMLUtils | 0.1.9 |
| htmlwidgets | 1.6.4 | HTqPCR | 1.62.0 |
| HTSCluster | 2.0.11 | HTSeqGenie | 4.32.0 |
| HTSFilter | 1.48.0 | httpcache | 1.2.0 |
| httpcode | 0.3.0 | httpuv | 1.6.16 |
| httr | 1.4.7 | httr2 | 1.2.1 |
| HubPub | 1.16.0 | huge | 1.3.5 |
| HumanTranscriptomeCompendium | 1.17.0 | hummingbird | 1.18.0 |
| hunspell | 3.0.6 | hwriter | 1.3.2.1 |
| HybridMTest | 1.52.0 | hypeR | 2.4.0 |
| hyperdraw | 1.60.0 | hypergraph | 1.80.0 |
| iASeq | 1.52.0 | iasva | 1.26.0 |
| iBBiG | 1.52.0 | ibh | 1.56.0 |
| iBMQ | 1.48.0 | iC10 | 2.0.2 |
| iC10TrainingData | 2.0.1 | ica | 1.0-3 |
| iCARE | 1.36.0 | Icens | 1.80.0 |
| icetea | 1.26.0 | iCheck | 1.38.0 |
| iChip | 1.62.0 | iClusterPlus | 1.44.0 |
| iCNV | 1.28.0 | iCOBRA | 1.36.0 |
| ICS | 1.4-2 | ICSNP | 1.1-2 |
| ideal | 2.2.0 | IdeoViz | 1.44.0 |
| idiogram | 1.84.0 | IDPmisc | 1.1.21 |
| idpr | 1.18.0 | idr | 1.3 |
| idr2d | 1.22.0 | ids | 1.0.1 |
| ieugwasr | 1.1.0 | IFAA | 1.10.0 |
| iGC | 1.38.0 | IgGeneUsage | 1.22.0 |
| igraph | 2.1.4 | igvR | 1.28.0 |
| IHW | 1.36.0 | Illumina450ProbeVariants.db | 1.44.0 |
| IlluminaHumanMethylation450kanno.ilmn12.hg19 | 0.6.1 | IlluminaHumanMethylation450kmanifest | 0.4.0 |
| IlluminaHumanMethylationEPICanno.ilm10b2.hg19 | 0.6.0 | IlluminaHumanMethylationEPICanno.ilm10b4.hg19 | 0.6.0 |
| IlluminaHumanMethylationEPICmanifest | 0.3.0 | IlluminaHumanMethylationEPICv2anno.20a1.hg38 | 1.0.0 |
| IlluminaHumanMethylationEPICv2manifest | 1.0.0 | illuminaio | 0.50.0 |
| ILoReg | 1.18.0 | imager | 1.0.5 |
| IMAS | 1.32.0 | imcRtools | 1.14.0 |
| IMMAN | 1.28.0 | ImmuneSpaceR | 1.30.0 |
| immunoClust | 1.40.0 | immunotation | 1.16.0 |
| imp4p | 1.2 | IMPCdata | 1.44.0 |
| import | 1.3.2 | impute | 1.82.0 |
| imputeLCMD | 2.1 | inaparc | 1.2.0 |
| INDEED | 2.22.0 | ineq | 0.2-13 |
| iNETgrate | 1.6.0 | iNEXT | 3.0.2 |
| infercnv | 1.24.0 | infinityFlow | 1.18.0 |
| Informeasure | 1.18.0 | infotheo | 1.2.0.1 |
| ini | 0.3.1 | inline | 0.3.21 |
| InPAS | 2.16.0 | INPower | 1.44.0 |
| insight | 1.4.0 | INSPEcT | 1.38.0 |
| instantiate | 0.2.3 | INTACT | 1.8.0 |
| InTAD | 1.28.0 | intansv | 1.48.0 |
| interacCircos | 1.18.0 | InteractionSet | 1.36.1 |
| InteractiveComplexHeatmap | 1.16.0 | interactiveDisplay | 1.46.0 |
| interactiveDisplayBase | 1.46.0 | InterCellar | 2.14.0 |
| IntEREst | 1.32.0 | intergraph | 2.0-4 |
| InterMineR | 1.24.0 | interp | 1.1-6 |
| intervals | 0.15.5 | IntOMICS | 1.2.0 |
| IntramiRExploreR | 1.30.0 | intrinsicDimension | 1.2.0 |
| inum | 1.0-5 | InvariantCausalPrediction | 0.8 |
| invgamma | 1.2 | IONiseR | 2.32.0 |
| iPAC | 1.46.0 | iPath | 1.14.0 |
| ipdDb | 1.26.0 | IPO | 1.34.0 |
| ipred | 0.9-15 | IRanges | 2.42.0 |
| IRdisplay | 1.1 | IRkernel | 1.3.2 |
| irlba | 2.3.5.1 | irr | 0.84.1 |
| isa2 | 0.3.6 | ISAnalytics | 1.18.0 |
| iSEE | 2.20.0 | iSEEde | 1.6.0 |
| iSEEhex | 1.10.0 | iSEEhub | 1.10.0 |
| iSEEindex | 1.6.0 | iSEEpathways | 1.6.0 |
| iSEEu | 1.20.0 | iSeq | 1.60.0 |
| ISLET | 1.10.0 | Iso | 0.0-21 |
| isoband | 0.2.7 | isobar | 1.54.0 |
| IsoBayes | 1.6.1 | ISOcodes | 2025.05.18 |
| IsoCorrectoR | 1.26.0 | IsoCorrectoRGUI | 1.24.0 |
| IsoformSwitchAnalyzeR | 2.8.0 | ISoLDE | 1.36.0 |
| isomiRs | 1.36.1 | isotree | 0.6.1-4 |
| isva | 1.9 | ITALICS | 2.68.0 |
| ITALICSData | 2.46.0 | iterativeBMA | 1.66.0 |
| iterativeBMAsurv | 1.66.0 | iterators | 1.0.14 |
| iterClust | 1.24.0 | itertools | 0.1-3 |
| IVAS | 2.28.0 | ivygapSE | 1.30.0 |
| IWTomics | 1.32.0 | JADE | 2.0-4 |
| janeaustenr | 1.0.0 | janitor | 2.2.1 |
| JASPAR2016 | 1.36.0 | JASPAR2018 | 1.1.1 |
| JASPAR2024 | 0.99.7 | jomo | 2.7-6 |
| jpeg | 0.1-11 | jquerylib | 0.1.4 |
| jsonlite | 2.0.0 | jsonvalidate | 1.5.0 |
| kableExtra | 1.4.0 | karyoploteR | 1.34.2 |
| katdetectr | 1.10.0 | KBoost | 1.16.0 |
| KCsmart | 2.66.0 | kde1d | 1.1.1 |
| kebabs | 1.42.0 | KEGGandMetacoreDzPathwaysGEO | 1.28.0 |
| KEGGdzPathwaysGEO | 1.46.0 | KEGGgraph | 1.68.0 |
| KEGGlincs | 1.34.0 | keggorthology | 2.60.0 |
| KEGGREST | 1.48.1 | Kendall | 2.2.1 |
| keras | 2.16.0 | KernelKnn | 1.1.5 |
| kernlab | 0.9-33 | kinship2 | 1.9.6.1 |
| KinSwingR | 1.26.0 | kissDE | 1.28.0 |
| kknn | 1.4.1 | klaR | 1.7-3 |
| km.ci | 0.5-6 | kmer | 1.1.2 |
| KMsurv | 0.1-6 | knitr | 1.50 |
| knitrBootstrap | 1.0.3 | knn.covertree | 1.0 |
| knnmi | 1.0 | KnowSeq | 1.22.0 |
| KOdata | 1.34.0 | kohonen | 3.0.12 |
| koRpus | 0.13-8 | koRpus.lang.en | 0.1-4 |
| kpeaks | 1.1.0 | kpmt | 0.1.0 |
| kriging | 1.2 | ks | 1.15.1 |
| kSamples | 1.2-12 | labeling | 0.4.3 |
| labelled | 2.14.1 | LACE | 2.12.0 |
| laeken | 0.5.3 | lambda.r | 1.2.4 |
| LambertW | 0.6.9-2 | lamW | 2.2.5 |
| LaplacesDemon | 16.1.6 | lapmix | 1.72.0 |
| lars | 1.3 | later | 1.4.4 |
| latex2exp | 0.9.6 | latticeExtra | 0.6-30 |
| lava | 1.8.1 | lavaan | 0.6-19 |
| lazyeval | 0.2.2 | LBE | 1.76.0 |
| lbfgs | 1.2.1.2 | ldblock | 1.38.0 |
| LEA | 3.20.0 | leaps | 3.2 |
| LearnBayes | 2.15.1 | learnr | 0.11.5 |
| LedPred | 1.42.0 | lefser | 1.18.0 |
| leiden | 0.4.3.1 | leidenbase | 0.1.35 |
| lemur | 1.6.1 | les | 1.58.0 |
| levi | 1.26.0 | lexicon | 1.2.1 |
| lfa | 2.8.0 | lfda | 1.1.3 |
| lgr | 0.5.0 | lhs | 1.2.0 |
| libcoin | 1.0-10 | LiblineaR | 2.10-24 |
| lifecycle | 1.0.4 | liger | 2.0.1 |
| LIM | 1.4.7.1 | limma | 3.64.3 |
| limmaGUI | 1.84.0 | limSolve | 2.0.1 |
| LineagePulse | 1.21.0 | lineagespot | 1.12.0 |
| linkcomm | 1.0-14 | LinkHD | 1.22.0 |
| Linnorm | 2.32.0 | linprog | 0.9-4 |
| LinTInd | 1.12.0 | lintr | 3.2.0 |
| lionessR | 1.22.0 | lipidr | 2.22.1 |
| LiquidAssociation | 1.62.0 | lisaClust | 1.16.0 |
| listenv | 0.9.1 | listviewer | 4.0.0 |
| litedown | 0.7 | lmdme | 1.50.0 |
| lme4 | 1.1-37 | lmerTest | 3.1-3 |
| lmodel2 | 1.7-4 | lmom | 3.2 |
| Lmoments | 1.3-1 | lmtest | 0.9-40 |
| LOBSTAHS | 1.34.1 | lobstr | 1.1.2 |
| locfdr | 1.1-8 | locfit | 1.5-9.12 |
| loci2path | 1.28.0 | log4r | 0.4.4 |
| logger | 0.4.0 | logging | 0.10-108 |
| logicFS | 2.28.0 | LogicReg | 1.6.6 |
| logistf | 1.26.1 | logitnorm | 0.8.39 |
| logNormReg | 0.5-0 | logr | 1.3.9 |
| logspline | 2.1.22 | lokern | 1.1-12 |
| LOLA | 1.38.0 | longitudinal | 1.1.13 |
| loo | 2.8.0 | LoomExperiment | 1.26.1 |
| LPE | 1.82.0 | LPEadj | 1.62.0 |
| lpNet | 2.40.0 | lpSolve | 5.6.23 |
| lpSolveAPI | 5.5.2.0-17.14 | lpsymphony | 1.36.0 |
| LRBaseDbi | 2.18.1 | LRcell | 1.16.0 |
| lsa | 0.73.3 | LSD | 4.1-0 |
| lsr | 0.5.2 | lubridate | 1.9.4 |
| lumi | 2.60.0 | lumiHumanAll.db | 1.22.0 |
| LungCancerACvsSCCGEO | 1.44.0 | lwgeom | 0.2-14 |
| LymphoSeq | 1.36.0 | LymphoSeqDB | 0.99.2 |
| M3C | 1.30.0 | M3Drop | 1.34.0 |
| m6Aboost | 1.14.0 | Maaslin2 | 1.22.0 |
| maaslin3 | 1.0.0 | Macarron | 1.12.2 |
| macat | 1.76.0 | maCorrPlot | 1.78.0 |
| MACSQuantifyR | 1.22.0 | MACSr | 1.16.0 |
| made4 | 1.82.0 | MADSEQ | 1.34.0 |
| MafDb.1Kgenomes.phase3.hs37d5 | 3.10.0 | MafDb.ExAC.r1.0.hs37d5 | 3.10.0 |
| MafDb.gnomADex.r2.1.hs37d5 | 3.10.0 | maftools | 2.24.0 |
| MAGAR | 1.16.0 | MAGeCKFlute | 2.9.0 |
| magic | 1.6-1 | magicaxis | 2.4.5 |
| magick | 2.8.7 | magpie | 1.8.0 |
| magrene | 1.10.0 | magrittr | 2.0.3 |
| MAI | 1.14.0 | MAIT | 1.42.0 |
| makecdfenv | 1.84.0 | MALDIquant | 1.22.3 |
| MANOR | 1.80.0 | MantelCorr | 1.78.0 |
| mapplots | 1.5.3 | mapproj | 1.2.12 |
| maPredictDSC | 1.46.0 | maps | 3.4.3 |
| mapscape | 1.32.0 | maptree | 1.4-9 |
| mariner | 1.8.1 | markdown | 2.0 |
| marr | 1.18.0 | marray | 1.86.0 |
| martini | 1.28.0 | maser | 1.26.0 |
| mashr | 0.2.79 | maSigPro | 1.80.0 |
| maskBAD | 1.52.0 | MassArray | 1.60.0 |
| massiR | 1.44.0 | MassSpecWavelet | 1.74.0 |
| MAST | 1.33.0 | mastR | 1.8.0 |
| matchBox | 1.50.0 | matchingR | 1.3.3 |
| mathjaxr | 1.8-0 | matlab | 1.0.4.1 |
| matrixcalc | 1.0-6 | MatrixEQTL | 2.3 |
| MatrixExtra | 0.1.15 | MatrixGenerics | 1.20.0 |
| MatrixModels | 0.5-4 | MatrixQCvis | 1.16.0 |
| MatrixRider | 1.40.0 | matrixStats | 1.5.0 |
| matrixTests | 0.2.3 | matter | 2.10.0 |
| maxLik | 1.5-2.1 | maxstat | 0.7-26 |
| MBA | 0.1-2 | MBAmethyl | 1.42.0 |
| MBASED | 1.42.0 | MBCB | 1.62.0 |
| MBECS | 1.12.0 | mbest | 0.6.1 |
| mbkmeans | 1.24.0 | mboost | 2.9-11 |
| mBPCR | 1.62.0 | MBQN | 2.20.0 |
| mbQTL | 1.8.0 | MBttest | 1.36.0 |
| MCbiclust | 1.32.0 | mcbiopi | 1.1.6 |
| MCL | 1.0 | mclust | 6.1.1 |
| mclustcomp | 0.3.3 | mcmc | 0.9-8 |
| MCMCglmm | 2.36 | MCMCpack | 1.7-1 |
| MCMCprecision | 0.4.2 | mco | 1.17 |
| mcr | 1.3.3.1 | mCSEA | 1.28.0 |
| mCSEAdata | 1.28.0 | mdp | 1.28.0 |
| mdqc | 1.70.0 | MDTS | 1.28.0 |
| MEAL | 1.38.0 | MeasurementError.cor | 1.80.0 |
| MEAT | 1.20.0 | MEB | 1.22.0 |
| mediation | 4.5.1 | MEDIPS | 1.60.0 |
| MEDME | 1.68.0 | mefa | 3.2-10 |
| megadepth | 1.18.0 | MEIGOR | 1.42.0 |
| Melissa | 1.24.0 | memes | 1.16.0 |
| memoise | 2.0.1 | memuse | 4.2-3 |
| Mergeomics | 1.36.0 | MeSHDbi | 1.44.0 |
| meshes | 1.34.0 | meshr | 2.14.0 |
| MesKit | 1.18.0 | MESS | 0.5.12 |
| messina | 1.44.0 | metabCombiner | 1.18.0 |
| metabinR | 1.10.0 | MetaboAnnotation | 1.12.0 |
| MetaboCoreUtils | 1.16.1 | metaboliteIDmapping | 1.0.0 |
| metabolomicsWorkbenchR | 1.18.0 | metabomxtr | 1.42.0 |
| MetaboSignal | 1.38.0 | metaCCA | 1.36.0 |
| MetaCycle | 1.2.0 | MetaCyto | 1.30.0 |
| metadat | 1.4-0 | metafor | 4.8-0 |
| metagene2 | 1.24.0 | metagenomeSeq | 1.50.0 |
| metahdep | 1.66.0 | metaMA | 3.1.3 |
| metaMS | 1.44.0 | MetaNeighbor | 1.28.0 |
| metap | 1.12 | MetaPhOR | 1.10.0 |
| metapod | 1.16.0 | metapone | 1.14.0 |
| metaSeq | 1.48.0 | metaseqR2 | 1.20.0 |
| MetBrewer | 0.2.0 | MetCirc | 1.38.0 |
| methimpute | 1.30.0 | methInheritSim | 1.30.0 |
| MethPed | 1.36.0 | MethReg | 1.18.0 |
| methrix | 1.22.1 | MethTargetedNGS | 1.40.0 |
| MethylAid | 1.42.0 | methylCC | 1.22.0 |
| methylclock | 1.14.0 | methylclockData | 1.16.0 |
| methylGSA | 1.26.0 | methylInheritance | 1.32.0 |
| methylKit | 1.34.0 | MethylMix | 2.38.0 |
| methylMnM | 1.46.0 | methylPipe | 1.42.1 |
| methylscaper | 1.16.0 | MethylSeekR | 1.48.0 |
| methylSig | 1.20.0 | methylumi | 2.54.0 |
| MetID | 1.26.0 | MetNet | 1.26.1 |
| metR | 0.18.1 | mfa | 1.30.0 |
| Mfuzz | 2.68.0 | MGFM | 1.42.0 |
| MGFR | 1.34.0 | MGLM | 0.2.1 |
| mgsa | 1.56.0 | mgsub | 1.7.3 |
| mhsmm | 0.4.21 | mia | 1.16.1 |
| miaSim | 1.14.0 | miaViz | 1.16.0 |
| mice | 3.18.0 | MiChip | 1.62.0 |
| microbenchmark | 1.5.0 | microbiome | 1.30.0 |
| microbiomeDASim | 1.22.0 | microbiomeExplorer | 1.18.0 |
| microbiomeMarker | 1.12.2 | MicrobiomeProfiler | 1.14.0 |
| MicrobiomeStat | 1.2 | MicrobiotaProcess | 1.20.1 |
| microRNA | 1.66.0 | microSTASIS | 1.8.0 |
| MICSQTL | 1.6.0 | midasHLA | 1.16.0 |
| miloR | 2.4.1 | mimager | 1.32.0 |
| mime | 0.13 | mina | 1.16.0 |
| MineICA | 1.48.0 | minet | 3.66.0 |
| minfi | 1.54.1 | MinimumDistance | 1.52.1 |
| miniUI | 0.1.2 | minpack.lm | 1.2-4 |
| minqa | 1.2.8 | MiPP | 1.80.0 |
| miQC | 1.16.0 | MIRA | 1.30.0 |
| MiRaGE | 1.50.0 | mirbase.db | 1.2.1 |
| miRBaseVersions.db | 1.1.0 | miRcomp | 1.38.1 |
| miRcompData | 1.38.0 | mirIntegrator | 1.38.0 |
| miRLAB | 1.38.0 | miRNAmeConverter | 1.36.0 |
| miRNApath | 1.68.0 | miRNAtap | 1.42.0 |
| miRNAtap.db | 0.99.10 | mirTarRnaSeq | 1.16.0 |
| misc3d | 0.9-1 | miscTools | 0.6-28 |
| missForest | 1.5 | missMDA | 1.20 |
| missMethyl | 1.42.0 | missRows | 1.28.0 |
| mistyR | 1.16.0 | mitch | 1.20.0 |
| mitml | 0.4-5 | mitoClone2 | 1.14.0 |
| mitools | 2.4 | mixOmics | 6.32.0 |
| mixsmsn | 1.1-11 | mixsqp | 0.3-54 |
| mixtools | 2.0.0.1 | MKmisc | 1.9 |
| mlapi | 0.1.1 | mlbench | 2.1-6 |
| MLInterfaces | 1.88.1 | MLmetrics | 1.1.3 |
| MLP | 1.56.0 | mlr3 | 1.1.0 |
| mlr3learners | 0.12.0 | mlr3measures | 1.0.0 |
| mlr3misc | 0.18.0 | mlr3tuning | 1.4.0 |
| MLSeq | 2.26.0 | mltools | 0.3.5 |
| mmand | 1.6.3 | MMDiff2 | 1.36.0 |
| MMUPHin | 1.22.0 | mnem | 1.24.0 |
| mnormt | 2.1.1 | moanin | 1.16.1 |
| MobilityTransformR | 1.6.0 | mockery | 0.4.4 |
| MODA | 1.34.0 | ModCon | 1.16.0 |
| modeest | 2.4.0 | ModelMetrics | 1.2.2.2 |
| modelr | 0.1.11 | modeltools | 0.2-24 |
| Modstrings | 1.24.0 | MOFA2 | 1.18.0 |
| MOFAdata | 1.24.0 | MOGAMUN | 1.18.0 |
| mogsa | 1.42.0 | MoleculeExperiment | 1.8.0 |
| MOMA | 1.20.0 | moments | 0.14.1 |
| monaLisa | 1.14.0 | monocle | 2.36.0 |
| Moonlight2R | 1.6.0 | MoonlightR | 1.34.0 |
| mosaicCore | 0.9.5 | mosaics | 2.46.0 |
| mosbi | 1.14.0 | mosdef | 1.4.1 |
| MOSim | 2.4.0 | Motif2Site | 1.12.0 |
| motifbreakR | 2.22.0 | motifcounter | 1.32.0 |
| MotifDb | 1.50.0 | motifmatchr | 1.30.0 |
| motifStack | 1.52.0 | MouseFM | 1.18.0 |
| MPFE | 1.44.0 | mpm | 1.0-23 |
| mpra | 1.30.1 | MPRAnalyze | 1.26.0 |
| MQmetrics | 1.10.0 | mrfDepth | 1.0.17 |
| mRMRe | 2.1.2.2 | msa | 1.40.0 |
| MSA2dist | 1.12.0 | MsBackendMassbank | 1.16.1 |
| MsBackendMgf | 1.16.0 | MsBackendMsp | 1.12.0 |
| MsBackendRawFileReader | 1.14.0 | MsBackendSql | 1.8.0 |
| MsCoreUtils | 1.20.0 | msdata | 0.48.0 |
| MsDataHub | 1.8.0 | MsExperiment | 1.10.1 |
| MsFeatures | 1.16.0 | msgbsR | 1.32.0 |
| msgps | 1.3.5 | msigdb | 1.16.0 |
| msigdbdf | 24.1.0 | msigdbr | 25.1.1 |
| msImpute | 1.18.0 | mslp | 1.10.0 |
| msm | 1.8.2 | msmsEDA | 1.46.0 |
| msmsTests | 1.46.0 | MSnbase | 2.34.1 |
| MSnID | 1.42.0 | MSPrep | 1.18.0 |
| msPurity | 1.34.0 | MSQC | 1.1.0 |
| msqrob2 | 1.16.0 | MsQuality | 1.8.3 |
| MSstats | 4.16.1 | MSstatsBig | 1.6.0 |
| MSstatsConvert | 1.18.1 | MSstatsLiP | 1.14.1 |
| MSstatsLOBD | 1.16.0 | MSstatsPTM | 2.10.1 |
| MSstatsQC | 2.26.0 | MSstatsQCgui | 1.28.0 |
| MSstatsShiny | 1.10.0 | MSstatsTMT | 2.16.0 |
| MuData | 1.12.0 | MuDataSeurat | 0.0.0.9000 |
| Mulcom | 1.58.0 | multcomp | 1.4-28 |
| multcompView | 0.1-10 | MultiAssayExperiment | 1.34.0 |
| MultiBaC | 1.18.0 | multiClust | 1.38.0 |
| multicool | 1.0.1 | MultiDataSet | 1.36.0 |
| multiGSEA | 1.18.0 | multiHiCcompare | 1.26.0 |
| MultiMed | 2.30.0 | multiMiR | 1.30.0 |
| MultimodalExperiment | 1.8.0 | MultiRNAflow | 1.6.0 |
| multiscan | 1.68.0 | multitaper | 1.0-17 |
| multiWGCNA | 1.6.0 | multtest | 2.64.0 |
| MungeSumstats | 1.16.0 | munsell | 0.5.1 |
| Mus.musculus | 1.3.1 | muscat | 1.22.0 |
| muscle | 3.50.0 | musicatk | 2.2.1 |
| MutationalPatterns | 3.18.0 | mutoss | 0.1-13 |
| MVCClass | 1.82.0 | mvnfast | 0.2.8 |
| mvoutlier | 2.1.1 | mvtnorm | 1.3-3 |
| MWASTools | 1.32.0 | mwcsr | 0.1.9 |
| mygene | 1.44.0 | myvariant | 1.38.0 |
| mzID | 1.46.0 | mzR | 2.42.0 |
| nabor | 0.5.0 | NADA | 1.6-1.1 |
| NADfinder | 1.32.0 | naivebayes | 1.0.0 |
| naniar | 1.1.0 | nanoarrow | 0.7.0 |
| NanoMethViz | 3.4.0 | NanoStringDiff | 1.38.0 |
| NanoStringNCTools | 1.16.1 | nanotatoR | 1.18.0 |
| nanotime | 0.3.12 | NanoTube | 1.14.0 |
| naturalsort | 0.1.3 | NBAMSeq | 1.24.1 |
| NbClust | 3.0.1 | NBPSeq | 0.3.1 |
| ncdf4 | 1.24 | ncdfFlow | 2.54.0 |
| ncGTW | 1.22.0 | NCIgraph | 1.56.0 |
| NCmisc | 1.2.0 | ncRNAtools | 1.18.0 |
| ndexr | 1.30.0 | nearBynding | 1.18.0 |
| Nebulosa | 1.18.0 | nempi | 1.16.0 |
| neo4r | 0.1.1 | NetActivity | 1.10.0 |
| NetActivityData | 1.10.0 | netbiov | 1.36.0 |
| netboost | 2.16.0 | netDx | 1.14.0 |
| nethet | 1.40.0 | netOmics | 1.8.0 |
| NetPathMiner | 1.44.0 | netprioR | 1.34.0 |
| NetRep | 1.2.8 | netresponse | 1.68.0 |
| NetSAM | 1.48.0 | netSmooth | 1.28.0 |
| network | 1.19.0 | networkD3 | 0.4.1 |
| netZooR | 1.10.0 | NeuCA | 1.8.1 |
| NewWave | 1.18.0 | NGLVieweR | 1.4.0 |
| ngsReports | 2.10.0 | NHPoisson | 3.3 |
| nipals | 1.0 | nipalsMCIA | 1.6.0 |
| NISTunits | 1.0.1 | nleqslv | 3.3.5 |
| nloptr | 2.2.1 | NLP | 0.3-2 |
| nls2 | 0.3-4 | NMF | 0.28 |
| NMI | 2.0 | nnlasso | 0.3 |
| nnls | 1.6 | nnNorm | 2.72.0 |
| nnSVG | 1.12.0 | nnTensor | 1.3.0 |
| NOISeq | 2.52.0 | nondetects | 2.38.1 |
| nor1mix | 1.3-3 | NoRCE | 1.19.0 |
| norm | 1.0-11.1 | normalize450K | 1.36.0 |
| NormalyzerDE | 1.26.0 | NormqPCR | 1.54.0 |
| normr | 1.34.0 | nortest | 1.0-4 |
| Nozzle.R1 | 1.1-1.1 | np | 0.60-18 |
| NPARC | 1.20.0 | npGSEA | 1.44.0 |
| nsga2R | 1.1 | NTW | 1.58.0 |
| nucleoSim | 1.36.0 | nucleR | 2.40.0 |
| nuCpos | 1.26.0 | nullranges | 1.14.0 |
| numbers | 0.8-5 | numDeriv | 2016.8-1.1 |
| NuPoP | 2.16.0 | NxtIRFdata | 1.14.0 |
| oaqc | 2.0.0 | objectProperties | 0.6.8 |
| objectSignals | 0.10.3 | occugene | 1.68.0 |
| OCplus | 1.82.0 | octad | 1.9.0 |
| octad.db | 1.10.0 | odseq | 1.36.0 |
| officer | 0.6.10 | OGRE | 1.12.0 |
| oligo | 1.72.0 | oligoClasses | 1.70.0 |
| OLIN | 1.86.0 | OLINgui | 1.82.0 |
| omada | 1.10.0 | OmaDB | 2.24.0 |
| omicade4 | 1.48.0 | OmicCircos | 1.46.0 |
| omicplotR | 1.28.0 | omicRexposome | 1.30.0 |
| OMICsPCA | 1.26.0 | OMICsPCAdata | 1.26.0 |
| omicsPrint | 1.28.0 | omicsViewer | 1.12.0 |
| Omixer | 1.18.0 | OmnipathR | 3.16.0 |
| ompBAM | 1.12.0 | oncomix | 1.30.0 |
| oncoscanR | 1.10.0 | OncoScore | 1.36.0 |
| OncoSimulR | 4.10.0 | onlineFDR | 2.16.0 |
| ontologyIndex | 2.12 | ontologyPlot | 1.7 |
| ontoProc | 2.2.1 | openair | 2.18-2 |
| opencpu | 2.2.14 | openCyto | 2.20.0 |
| openPrimeR | 1.30.1 | openPrimeRui | 1.24.0 |
| openssl | 2.3.3 | OpenStats | 1.20.0 |
| openxlsx | 4.2.8 | operator.tools | 1.6.3 |
| oposSOM | 2.26.0 | oppar | 1.36.1 |
| oppti | 1.21.0 | optimalFlow | 1.20.0 |
| optimalFlowData | 1.20.0 | optimx | 2025-4.9 |
| optparse | 1.7.5 | OPWeight | 1.30.0 |
| OrderedList | 1.80.0 | ordinal | 2023.12-4.1 |
| ore | 1.7.5.1 | ORFhunteR | 1.16.0 |
| ORFik | 1.28.2 | org.Bt.eg.db | 3.21.0 |
| org.Ce.eg.db | 3.21.0 | org.Dm.eg.db | 3.21.0 |
| org.Dr.eg.db | 3.21.0 | org.Hs.eg.db | 3.21.0 |
| org.Mm.eg.db | 3.21.0 | org.Rn.eg.db | 3.21.0 |
| org.Sc.sgd.db | 3.21.0 | Organism.dplyr | 1.36.0 |
| OrganismDbi | 1.50.0 | OrgMassSpecR | 0.5-3 |
| origami | 1.0.7 | orthogene | 1.14.0 |
| orthos | 1.6.0 | orthosData | 1.6.0 |
| OSAT | 1.56.0 | Oscope | 1.38.0 |
| osfr | 0.2.9 | osqp | 0.6.3.3 |
| OTUbase | 1.58.0 | outliers | 0.15 |
| OUTRIDER | 1.26.3 | OutSplice | 1.8.0 |
| OVESEG | 1.24.0 | PAA | 1.42.0 |
| packFinder | 1.20.0 | padma | 1.18.1 |
| PADOG | 1.50.0 | pageRank | 1.18.0 |
| paintmap | 1.0 | PAIRADISE | 1.24.1 |
| paircompviz | 1.46.0 | PairedData | 1.1.1 |
| pairedGSEA | 1.8.0 | pairkat | 1.14.0 |
| pairsD3 | 0.1.3 | paletteer | 1.6.0 |
| palmerpenguins | 0.1.1 | pals | 1.10 |
| pamr | 1.57 | pan | 1.9 |
| pandaR | 1.40.0 | pander | 0.6.6 |
| panelcn.mops | 1.30.0 | PanomiR | 1.12.0 |
| panp | 1.78.0 | PANR | 1.54.0 |
| PanViz | 1.4.0 | paradox | 1.0.1 |
| parallelDist | 0.2.6 | ParallelLogger | 3.5.0 |
| parallelly | 1.45.1 | pareg | 1.6.0 |
| parglms | 1.40.0 | parmigene | 1.1.1 |
| parody | 1.66.1 | partCNV | 1.6.0 |
| partykit | 1.2-24 | pasilla | 1.36.0 |
| PAST | 1.24.0 | pastecs | 1.4.2 |
| patchwork | 1.3.2 | Path2PPI | 1.38.0 |
| pathifier | 1.46.0 | PathNet | 1.48.0 |
| PathoStat | 1.34.0 | pathRender | 1.76.0 |
| pathview | 1.48.0 | pathwayPCA | 1.24.0 |
| paws.common | 0.8.5 | paws.storage | 0.9.0 |
| paxtoolsr | 1.36.0 | pbapply | 1.7-4 |
| pbdZMQ | 0.3-14 | pbivnorm | 0.6.0 |
| pbkrtest | 0.5.5 | pbmcapply | 1.5.1 |
| pcaExplorer | 3.2.0 | pcalg | 2.7-12 |
| pcaMethods | 2.0.0 | PCAN | 1.36.0 |
| pcaPP | 2.0-5 | PCAtools | 2.20.0 |
| pcxn | 2.24.0 | pcxnData | 2.24.0 |
| pd.mapping50k.xba240 | 3.12.0 | PDATK | 1.16.1 |
| pdfCluster | 1.0-4 | pdftools | 3.5.0 |
| pdInfoBuilder | 1.72.0 | pdist | 1.2.1 |
| PeacoQC | 1.18.0 | peakPantheR | 1.22.0 |
| PECA | 1.44.0 | peco | 1.20.0 |
| penalized | 0.9-52 | pengls | 1.14.0 |
| PepsNMR | 1.26.0 | pepStat | 1.42.0 |
| Peptides | 2.4.6 | pepXMLTab | 1.42.0 |
| PerformanceAnalytics | 2.0.8 | periodicDNA | 1.18.0 |
| permute | 0.9-8 | PFAM.db | 3.21.0 |
| pfamAnalyzeR | 1.8.0 | pgca | 1.32.0 |
| phangorn | 2.12.1 | phantasus | 1.28.0 |
| phantasusLite | 1.6.0 | PharmacoGx | 3.12.2 |
| phastCons100way.UCSC.hg19 | 3.7.2 | phastCons100way.UCSC.hg38 | 3.7.1 |
| phateR | 1.0.7 | pheatmap | 1.0.13 |
| phemd | 1.18.0 | PhenoGeneRanker | 1.16.0 |
| phenomis | 1.10.0 | phenopath | 1.32.0 |
| phenoTest | 1.56.0 | PhenStat | 2.44.0 |
| philentropy | 0.9.0 | philr | 1.34.0 |
| PhIPData | 1.16.1 | phosphonormalizer | 1.32.0 |
| phosphoricons | 0.2.1 | PhosR | 1.18.1 |
| phyclust | 0.1-34 | phylobase | 0.8.12 |
| phylogram | 2.1.0 | phylolm | 2.6.5 |
| PhyloProfile | 2.0.6 | phyloseq | 1.52.0 |
| Pi | 2.14.0 | piano | 2.24.0 |
| pickgene | 1.80.0 | PICS | 2.50.0 |
| Pigengene | 1.34.0 | pillar | 1.11.0 |
| pinfsc50 | 1.3.0 | PING | 2.51.0 |
| pingr | 2.0.5 | pipeComp | 1.18.0 |
| pipeFrame | 1.24.0 | pixmap | 0.4-14 |
| pkgbuild | 1.4.8 | pkgconfig | 2.0.3 |
| pkgdown | 2.1.3 | pkgload | 1.4.0 |
| planet | 1.16.0 | planttfhunter | 1.8.0 |
| plasmut | 1.6.0 | plgem | 1.80.0 |
| plier | 1.78.0 | PloGO2 | 1.14.0 |
| plogr | 0.2.0 | plot3D | 1.4.2 |
| plot3Drgl | 1.0.5 | plotgardener | 1.14.0 |
| plotGrouper | 1.26.0 | plotly | 4.11.0 |
| plotmo | 3.6.4 | plotrix | 3.8-4 |
| plotROC | 2.3.3 | PLPE | 1.68.0 |
| pls | 2.8-5 | plsgenomics | 1.5-3 |
| plsVarSel | 0.9.13 | plyinteractions | 1.6.0 |
| plyr | 1.8.9 | plyranges | 1.28.0 |
| PMA | 1.2-4 | PMCMRplus | 1.9.12 |
| pmm | 1.40.0 | pmp | 1.20.0 |
| png | 0.1-8 | PoDCall | 1.16.0 |
| podkat | 1.40.0 | pogos | 1.28.0 |
| poibin | 1.6 | PoiClaClu | 1.0.2.1 |
| polspline | 1.1.25 | Polychrome | 1.5.4 |
| polyclip | 1.10-7 | polyester | 1.38.0 |
| polylabelr | 0.3.0 | polynom | 1.4-1 |
| PolynomF | 2.0-8 | PolyPhen.Hsapiens.dbSNP131 | 1.0.2 |
| POMA | 1.18.0 | poorman | 0.2.7 |
| posterior | 1.6.1 | poweRlaw | 1.0.0 |
| powerTCR | 1.28.0 | POWSC | 1.16.0 |
| ppclust | 1.1.0.1 | ppcor | 1.1 |
| ppcseq | 1.16.0 | PPInfer | 1.34.0 |
| pqsfinder | 2.24.0 | prabclus | 2.3-4 |
| pracma | 2.4.4 | praise | 1.0.0 |
| pram | 1.24.0 | praznik | 11.0.0 |
| prebs | 1.48.0 | preciseTAD | 1.18.0 |
| precrec | 0.14.5 | PREDA | 1.54.0 |
| preprocessCore | 1.70.0 | preseqR | 4.0.0 |
| prettydoc | 0.4.1 | prettyunits | 1.2.0 |
| primirTSS | 1.26.0 | PRIMME | 3.2-6 |
| PrInCE | 1.24.0 | princurve | 2.1.6 |
| prismatic | 1.1.2 | proActiv | 1.18.0 |
| proBAMr | 1.42.0 | pROC | 1.19.0.1 |
| PROcess | 1.84.0 | processx | 3.8.6 |
| procoil | 2.36.0 | proDA | 1.22.1 |
| prodlim | 2025.04.28 | profileModel | 0.6.1 |
| profileplyr | 1.24.1 | profileScoreDist | 1.36.0 |
| profmem | 0.7.0 | profvis | 0.4.0 |
| progeny | 1.30.0 | progress | 1.2.3 |
| progressr | 0.15.1 | proj4 | 1.0-15 |
| projectR | 1.24.0 | pRoloc | 1.48.0 |
| pRolocdata | 1.46.0 | pRolocGUI | 2.18.0 |
| PROMISE | 1.60.0 | promises | 1.3.3 |
| PROPER | 1.40.0 | PROPS | 1.30.0 |
| Prostar | 1.40.0 | proteinProfiles | 1.48.0 |
| ProteoDisco | 1.14.0 | ProteoMM | 1.26.0 |
| protGear | 1.12.0 | ProtGenerics | 1.40.0 |
| proto | 1.0.0 | protolite | 2.3.1 |
| protr | 1.7-5 | protViz | 0.7.9 |
| proxy | 0.4-27 | proxyC | 0.5.2 |
| PRROC | 1.4 | pryr | 0.1.6 |
| ps | 1.9.1 | PSCBS | 0.68.0 |
| pscl | 1.5.9 | PSEA | 1.36.0 |
| psichomics | 1.34.0 | PSMatch | 1.12.0 |
| pspline | 1.0-21 | psych | 2.5.6 |
| psygenet2r | 1.34.1 | ptairMS | 1.16.0 |
| ptw | 1.9-16 | puma | 3.50.0 |
| PureCN | 2.14.1 | purrr | 1.1.0 |
| pvac | 1.56.0 | pvca | 1.48.0 |
| pvclust | 2.2-0 | Pviz | 1.42.0 |
| pwalign | 1.4.0 | PWMEnrich | 4.44.0 |
| pwOmics | 1.34.0 | pwr | 1.3-0 |
| qap | 0.1-2 | qckitfastq | 1.24.0 |
| qcmetrics | 1.46.0 | qdapRegex | 0.7.10 |
| qdapTools | 1.3.7 | QDNAseq | 1.44.0 |
| QFeatures | 1.18.0 | qgraph | 1.9.8 |
| qlcMatrix | 0.9.9 | qmtools | 1.12.0 |
| qpcR | 1.4-2 | qpcrNorm | 1.66.0 |
| qpdf | 1.4.1 | qpgraph | 2.42.0 |
| qPLEXanalyzer | 1.26.0 | qqconf | 1.3.2 |
| qqman | 0.1.9 | qs | 0.27.3 |
| qsea | 1.34.0 | qsmooth | 1.24.0 |
| QSutils | 1.26.0 | qsvaR | 1.12.0 |
| qtl | 1.70 | QTLExperiment | 2.0.1 |
| Qtlizer | 1.22.0 | quadprog | 1.5-8 |
| qualV | 0.3-5 | quanteda | 4.3.1 |
| quantiseqr | 1.16.0 | quantmod | 0.4.28 |
| quantreg | 6.1 | quantro | 1.42.0 |
| quantsmooth | 1.74.0 | quarto | 1.5.0 |
| QuartPAC | 1.34.0 | QuasR | 1.48.1 |
| QuaternaryProd | 1.42.0 | QUBIC | 1.36.0 |
| questionr | 0.8.1 | QuickJSR | 1.8.0 |
| quitefastmst | 0.9.0 | qusage | 2.42.0 |
| qvalue | 2.40.0 | qvcalc | 1.0.4 |
| R.cache | 0.17.0 | R.devices | 2.17.2 |
| R.filesets | 2.15.1 | R.huge | 0.10.1 |
| R.matlab | 3.7.0 | R.methodsS3 | 1.8.2 |
| R.oo | 1.27.1 | R.rsp | 0.46.0 |
| R.utils | 2.13.0 | R2HTML | 2.3.4 |
| R2jags | 0.8-9 | R2WinBUGS | 2.1-23 |
| R3CPET | 1.40.0 | r3Cseq | 1.54.0 |
| R453Plus1Toolbox | 1.58.0 | R4RNA | 1.36.0 |
| R6 | 2.6.1 | R6P | 0.4.0 |
| radiant.data | 1.6.7 | RadioGx | 2.12.0 |
| raer | 1.6.0 | rafalib | 1.0.4 |
| ragg | 1.4.0 | RaggedExperiment | 1.32.2 |
| RAIDS | 1.6.1 | rain | 1.42.0 |
| rainbow | 3.8 | ramr | 1.14.0 |
| ramwas | 1.32.0 | randomcoloR | 1.1.0.1 |
| randomForest | 4.7-1.2 | randomizr | 1.0.0 |
| RandomWalkRestartMH | 1.22.0 | randPack | 1.54.0 |
| randRotation | 1.20.0 | randtests | 1.0.2 |
| randtoolbox | 2.0.5 | ranger | 0.17.0 |
| RankAggreg | 0.6.6 | RankProd | 3.34.0 |
| RANN | 2.6.2 | rapiclient | 0.1.8 |
| rapidjsonr | 1.2.0 | RApiSerialize | 0.1.4 |
| rappdirs | 0.3.3 | rapportools | 1.2 |
| RAREsim | 1.12.0 | RareVariantVis | 2.36.0 |
| rARPACK | 0.11-0 | Rarr | 1.8.0 |
| raster | 3.6-32 | rawrr | 1.16.0 |
| RbcBook1 | 1.76.0 | Rbec | 1.16.0 |
| rBeta2009 | 1.0.1 | RBGL | 1.84.0 |
| rbibutils | 2.3 | RBioFormats | 1.8.0 |
| RBioinf | 1.68.0 | rbiom | 2.2.1 |
| rBiopaxParser | 2.48.0 | RBM | 1.40.0 |
| rbokeh | 0.5.1 | Rbowtie | 1.48.0 |
| Rbowtie2 | 2.14.0 | rbsurv | 2.66.0 |
| Rbwa | 1.12.0 | RCAS | 1.34.0 |
| RCASPAR | 1.54.0 | rcdk | 3.8.1 |
| rcdklibs | 2.9 | rcellminer | 2.30.1 |
| rcellminerData | 2.30.0 | rCGH | 1.38.0 |
| RCircos | 1.2.2 | rclipboard | 0.2.1 |
| RCM | 1.24.0 | rcmdcheck | 1.4.0 |
| Rcollectl | 1.8.0 | RColorBrewer | 1.1-3 |
| Rcpi | 1.44.0 | Rcpp | 1.1.0 |
| RcppAlgos | 2.9.3 | RcppAnnoy | 0.0.22 |
| RcppArmadillo | 14.6.3-1 | RcppCCTZ | 0.2.13 |
| RcppDate | 0.0.6 | RcppDE | 0.1.8 |
| RcppDist | 0.1.1.1 | RcppEigen | 0.3.4.0.2 |
| RcppGSL | 0.3.13 | RcppHNSW | 0.6.0 |
| RcppInt64 | 0.0.5 | RcppML | 0.3.7 |
| RcppNumerical | 0.6-0 | RcppParallel | 5.1.11-1 |
| RcppProgress | 0.4.2 | RcppRoll | 0.3.1 |
| RcppSpdlog | 0.0.22 | RcppThread | 2.2.0 |
| RcppTOML | 0.2.3 | RcppZiggurat | 0.1.8 |
| RCurl | 1.98-1.17 | Rcwl | 1.24.0 |
| RcwlPipelines | 1.24.0 | RCX | 1.12.0 |
| RCy3 | 2.28.1 | RCyjs | 2.30.0 |
| rDGIdb | 1.28.0 | Rdisop | 1.68.0 |
| rdist | 0.0.5 | Rdpack | 2.6.4 |
| RDRToolbox | 1.58.0 | reactable | 0.4.4 |
| reactome.db | 1.92.0 | ReactomeContentService4R | 1.10.0 |
| ReactomeGraph4R | 1.10.0 | ReactomeGSA | 1.22.0 |
| ReactomePA | 1.52.0 | reactR | 0.6.1 |
| readbitmap | 0.1.5 | reader | 1.0.6 |
| readJDX | 0.6.4 | ReadqPCR | 1.54.0 |
| readr | 2.1.5 | readxl | 1.4.5 |
| REBET | 1.26.0 | rebook | 1.18.0 |
| rebus | 0.1-3 | rebus.base | 0.0-3 |
| rebus.datetimes | 0.0-2 | rebus.numbers | 0.0-1.1 |
| rebus.unicode | 0.0-2 | receptLoss | 1.20.0 |
| recipes | 1.3.1 | reconsi | 1.20.0 |
| RecordLinkage | 0.4-12.5 | recount | 1.34.0 |
| recount3 | 1.18.0 | recountmethylation | 1.18.0 |
| recoup | 1.36.0 | RedeR | 3.4.0 |
| RedisParam | 1.10.0 | REDseq | 1.54.0 |
| redux | 1.1.4 | RefManageR | 1.4.0 |
| reformulas | 0.4.1 | regionalpcs | 1.6.0 |
| RegionalST | 1.6.0 | regioneR | 1.40.1 |
| regioneReloaded | 1.10.0 | regionReport | 1.42.0 |
| registry | 0.5-1 | regsplice | 1.34.1 |
| regutools | 1.20.0 | relations | 0.6-15 |
| reldist | 1.7-2 | relimp | 1.0-5 |
| remaCor | 0.0.20 | rematch | 2.0.0 |
| rematch2 | 2.1.2 | remotes | 2.5.0 |
| REMP | 1.32.1 | rentrez | 1.2.4 |
| renv | 1.1.5 | Repitools | 1.54.0 |
| repmis | 0.5.1 | repo | 2.1.5 |
| ReportingTools | 2.48.0 | reportr | 1.3.1 |
| reportROC | 3.6 | repr | 1.1.7 |
| reprex | 2.1.1 | RepViz | 1.24.0 |
| ReQON | 1.48.0 | reshape | 0.8.10 |
| reshape2 | 1.4.4 | ResidualMatrix | 1.18.0 |
| RESOLVE | 1.10.0 | restfulr | 0.0.16 |
| restfulSE | 1.24.0 | reticulate | 1.43.0 |
| retrofit | 1.8.0 | ReUseData | 1.8.0 |
| rex | 1.2.1 | rexposome | 1.30.0 |
| rfaRm | 1.20.0 | Rfast | 2.1.5.1 |
| Rfastp | 1.18.0 | rfPred | 1.46.0 |
| rGADEM | 2.55.0 | rGenomeTracks | 1.14.0 |
| rGenomeTracksData | 0.99.0 | rgl | 1.3.24 |
| RGMQL | 1.22.0 | RGMQLlib | 1.28.0 |
| RgnTX | 1.10.0 | rgoslin | 1.12.0 |
| RGraph2js | 1.36.0 | Rgraphviz | 2.52.0 |
| rGREAT | 2.10.0 | RGSEA | 1.42.0 |
| rgsepd | 1.40.0 | rhandsontable | 0.3.8 |
| rhdf5 | 2.52.1 | rhdf5client | 1.30.0 |
| rhdf5filters | 1.20.0 | Rhdf5lib | 1.30.0 |
| Rhisat2 | 1.24.0 | RhpcBLASctl | 0.23-42 |
| Rhtslib | 3.4.0 | RiboCrypt | 1.13.0 |
| RiboDiPA | 1.16.0 | RiboProfiling | 1.38.0 |
| ribor | 1.20.0 | riboSeqR | 1.42.0 |
| ribosomeProfilingQC | 1.20.0 | ridge | 3.3 |
| rifi | 1.12.0 | rifiComparative | 1.8.0 |
| RImmPort | 1.36.0 | Ringo | 1.66.0 |
| rintrojs | 0.3.4 | rio | 1.2.3 |
| Risa | 1.44.0 | RISmed | 2.3.0 |
| RITAN | 1.32.0 | RITANdata | 1.32.0 |
| RIVER | 1.32.0 | rjags | 4-17 |
| rJava | 1.0-11 | RJMCMCNucleosomes | 1.32.0 |
| rjson | 0.2.23 | rjsoncons | 1.3.2 |
| RJSONIO | 2.0.0 | Rlab | 4.0 |
| Rlabkey | 3.4.3 | rlang | 1.1.6 |
| RLassoCox | 1.16.0 | RLHub | 0.99.5 |
| rlist | 0.4.6.2 | RLMM | 1.70.0 |
| RLSeq | 1.5.2 | Rmagpie | 1.64.0 |
| RMallow | 1.1 | RMariaDB | 1.3.4 |
| rmarkdown | 2.29 | RMassBank | 3.18.0 |
| rmdformats | 1.0.4 | rmelting | 1.24.0 |
| rmeta | 3.0 | rmio | 0.4.0 |
| Rmisc | 1.5.1 | Rmixmod | 2.1.10 |
| Rmmquant | 1.26.0 | Rmpfr | 1.1-1 |
| Rmpi | 0.7-3.3 | rms | 8.0-0 |
| RMSNumpress | 1.0.1 | rmspc | 1.14.0 |
| RMTstat | 0.3.1 | rmutil | 1.1.10 |
| RMySQL | 0.11.1 | rmzqc | 0.7.0 |
| RNAAgeCalc | 1.20.0 | RNAdecay | 1.28.0 |
| rnaEditr | 1.18.0 | RNAinteract | 1.50.0 |
| RNAmodR | 1.22.0 | RNAmodR.AlkAnilineSeq | 1.22.0 |
| RNAmodR.ML | 1.22.0 | RNAmodR.RiboMethSeq | 1.22.0 |
| RNAsense | 1.22.0 | rnaseqcomp | 1.38.0 |
| RNAseqCovarImpute | 1.6.0 | RNASeqPower | 1.48.0 |
| RnaSeqSampleSize | 2.18.0 | RnaSeqSampleSizeData | 1.40.0 |
| RnBeads | 2.26.0 | RnBeads.hg19 | 1.40.0 |
| RnBeads.hg38 | 1.40.0 | rncl | 0.8.7 |
| RNeXML | 2.4.11 | rngtools | 1.5.2 |
| rngWELL | 0.10-10 | RNifti | 1.8.0 |
| Rnits | 1.42.0 | RNOmni | 1.0.1.2 |
| roar | 1.44.1 | roastgsa | 1.6.0 |
| robslopes | 1.1.3 | robust | 0.7-5 |
| robustbase | 0.99-4-1 | RobustRankAggreg | 1.2.1 |
| ROC | 1.84.0 | ROCit | 2.1.2 |
| ROCpAI | 1.20.0 | ROCR | 1.0-11 |
| ROI | 1.0-1 | ROI.plugin.lpsolve | 1.0-2 |
| RolDE | 1.12.0 | rols | 3.4.0 |
| ROntoTools | 2.36.0 | Rook | 1.2 |
| rootSolve | 1.8.2.4 | ropls | 1.40.0 |
| roptim | 0.1.6 | rorcid | 0.7.0 |
| ROSeq | 1.20.0 | ROTS | 2.0.0 |
| roxygen2 | 7.3.2 | RPA | 1.64.0 |
| rpart.plot | 3.1.3 | RPMM | 1.25 |
| rprimer | 1.12.0 | rprojroot | 2.1.1 |
| RProtoBufLib | 2.20.0 | rpx | 2.16.0 |
| Rqc | 1.42.0 | rqt | 1.34.0 |
| rqubic | 1.54.0 | rrcov | 1.7-7 |
| rRDP | 1.42.0 | RRHO | 1.48.0 |
| rrvgo | 1.20.0 | rsample | 1.3.1 |
| Rsamtools | 2.24.0 | rsbml | 2.66.0 |
| rScudo | 1.24.0 | rsemmed | 1.18.0 |
| RSeqAn | 1.28.0 | RSKC | 2.4.2 |
| rslurm | 0.6.2 | rsm | 2.10.6 |
| RSNNS | 0.4-17 | Rsolnp | 2.0.1 |
| rsparse | 0.5.3 | RSpectra | 0.16-2 |
| rSpectral | 1.0.0.10 | rsq | 2.7 |
| RSQLite | 2.4.3 | rstan | 2.32.7 |
| rstantools | 2.4.0 | rstatix | 0.7.2 |
| rstudioapi | 0.17.1 | Rsubread | 2.22.1 |
| rsvd | 1.0.5 | rsvg | 2.6.2 |
| RSVSim | 1.48.0 | rSWeeP | 1.20.0 |
| RTCA | 1.60.0 | RTCGA | 1.38.0 |
| RTCGAToolbox | 2.38.0 | rTensor | 1.4.9 |
| RTN | 2.32.0 | RTNduals | 1.32.0 |
| RTNsurvival | 1.32.0 | RTopper | 1.54.0 |
| Rtpca | 1.18.0 | rtracklayer | 1.68.0 |
| Rtreemix | 1.69.0 | RTriangle | 1.6-0.15 |
| rTRM | 1.46.0 | rTRMui | 1.46.0 |
| Rtsne | 0.17 | Rttf2pt1 | 1.3.12 |
| runibic | 1.30.0 | RUnit | 0.4.33.1 |
| ruv | 0.9.7.1 | RUVcorr | 1.40.0 |
| RUVnormalize | 1.42.0 | RUVnormalizeData | 1.28.0 |
| RUVSeq | 1.42.0 | rversions | 2.1.2 |
| rvest | 1.0.4 | rvinecopulib | 0.7.3.1.0 |
| Rvisdiff | 1.6.0 | RVS | 1.30.0 |
| RWeka | 0.4-46 | RWekajars | 3.9.3-2 |
| rWikiPathways | 1.28.0 | s2 | 1.1.9 |
| S4Arrays | 1.8.1 | S4Vectors | 0.46.0 |
| S7 | 0.2.0 | safe | 3.48.0 |
| safetensors | 0.2.0 | sagenhaft | 1.78.0 |
| SAIGEgds | 2.8.0 | sampleClassifier | 1.32.0 |
| sampling | 2.11 | SamSPECTRAL | 1.62.0 |
| sandwich | 3.1-1 | sangeranalyseR | 1.18.0 |
| sangerseqR | 1.44.0 | SANTA | 2.44.0 |
| SARC | 1.6.0 | sarks | 1.20.0 |
| sass | 0.4.10 | satuRn | 1.16.0 |
| SAVER | 1.1.2 | SBGNview | 1.22.0 |
| SBGNview.data | 1.22.0 | SBMLR | 2.4.0 |
| SC3 | 1.36.0 | Scale4C | 1.30.0 |
| ScaledMatrix | 1.16.0 | scales | 1.4.0 |
| scam | 1.2-19 | SCAN.UPC | 2.50.0 |
| scanMiR | 1.14.0 | scanMiRApp | 1.14.0 |
| scanMiRData | 1.14.0 | scAnnotatR | 1.14.0 |
| SCANVIS | 1.22.0 | SCArray | 1.16.0 |
| SCArray.sat | 1.8.0 | scater | 1.36.0 |
| scatterHatch | 1.14.0 | scattermore | 1.2 |
| scatterpie | 0.2.5 | scatterplot3d | 0.3-44 |
| scBFA | 1.22.0 | SCBN | 1.26.0 |
| scBubbletree | 1.10.0 | scCB2 | 1.18.0 |
| scClassify | 1.20.0 | sccomp | 2.0.0 |
| scCustomize | 3.1.3 | scDataviz | 1.18.0 |
| scDblFinder | 1.22.0 | scDD | 1.32.0 |
| scDDboost | 1.10.0 | scde | 2.36.0 |
| scDesign3 | 1.6.0 | scds | 1.24.0 |
| SCFA | 1.18.0 | scFeatureFilter | 1.28.0 |
| scFeatures | 1.8.0 | scGPS | 1.22.0 |
| schex | 1.22.0 | scHOT | 1.20.1 |
| scico | 1.5.0 | scider | 1.6.0 |
| scifer | 1.10.0 | scmap | 1.30.0 |
| scMerge | 1.24.0 | scMET | 1.10.0 |
| scmeth | 1.28.0 | SCnorm | 1.30.1 |
| scone | 1.32.1 | Sconify | 1.28.0 |
| SCOPE | 1.20.0 | scoreInvHap | 1.30.0 |
| scp | 1.18.0 | scPCA | 1.22.0 |
| scPipe | 2.8.0 | scran | 1.36.0 |
| scReClassify | 1.14.0 | scRecover | 1.24.0 |
| screenCounter | 1.8.0 | ScreenR | 1.10.0 |
| scRepertoire | 2.4.0 | scrime | 1.3.5 |
| scRNAseq | 2.22.0 | scRNAseqApp | 1.8.0 |
| scruff | 1.26.0 | scry | 1.20.0 |
| scrypt | 0.1.6 | scs | 3.2.7 |
| scShapes | 1.14.0 | scTensor | 2.18.2 |
| scTGIF | 1.22.0 | scTHI | 1.20.0 |
| sctransform | 0.4.2 | scTreeViz | 1.14.1 |
| scuttle | 1.18.0 | scviR | 1.8.0 |
| SDAMS | 1.28.0 | sechm | 1.16.0 |
| segmented | 2.1-4 | segmenter | 1.14.0 |
| segmentSeq | 2.42.0 | selectKSigs | 1.20.0 |
| selectr | 0.4-2 | SELEX | 1.40.0 |
| SemDist | 1.42.0 | semisup | 1.32.0 |
| sendmailR | 1.4-0 | seq.hotSPOT | 1.8.0 |
| seq2pathway | 1.40.0 | seq2pathway.data | 1.40.0 |
| seqArchR | 1.12.0 | seqArchRplus | 1.8.0 |
| SeqArray | 1.48.1 | seqbias | 1.50.0 |
| seqCAT | 1.30.0 | seqCNA | 1.48.0 |
| seqCNA.annot | 1.38.0 | seqcombo | 1.30.0 |
| SeqGate | 1.18.0 | SeqGSEA | 1.48.0 |
| seqinr | 4.2-36 | seqLogo | 1.74.0 |
| seqmagick | 0.1.7 | seqminer | 9.7 |
| seqPattern | 1.40.0 | seqsetvis | 1.28.0 |
| SeqSQC | 1.30.0 | seqTools | 1.42.0 |
| SeqVarTools | 1.46.0 | seriation | 1.5.8 |
| servr | 0.32 | sesame | 1.26.0 |
| sesameData | 1.26.0 | sessioninfo | 1.2.3 |
| SEtools | 1.22.0 | setRNG | 2024.2-1 |
| sets | 1.0-25 | settings | 0.2.7 |
| Seurat | 5.3.0 | SeuratObject | 5.1.0 |
| sevenbridges | 1.38.0 | sevenC | 1.28.0 |
| sf | 1.0-21 | sfheaders | 0.4.4 |
| sfsmisc | 1.1-21 | sftime | 0.3.1 |
| SGCP | 1.8.0 | sgeostat | 1.0-27 |
| SGSeq | 1.42.1 | shades | 1.4.0 |
| shadowtext | 0.1.6 | shape | 1.4.6.1 |
| SharedObject | 1.22.0 | shiny | 1.11.1 |
| shinyAce | 0.4.4 | shinyalert | 3.1.0 |
| shinyBS | 0.61.1 | shinybusy | 0.3.3 |
| shinycssloaders | 1.1.0 | shinycustomloader | 0.9.0 |
| shinyCyJS | 1.0.0 | shinydashboard | 0.7.3 |
| shinydashboardPlus | 2.0.6 | shinyepico | 1.16.0 |
| shinyFeedback | 0.4.0 | shinyFiles | 0.9.3 |
| shinyHeatmaply | 0.2.0 | shinyhelper | 0.3.2 |
| shinyjqui | 0.4.1 | shinyjs | 2.1.0 |
| shinylogs | 0.2.1 | shinymanager | 1.0.410 |
| shinyMatrix | 0.8.0 | shinymeta | 0.2.1 |
| shinyMethyl | 1.44.0 | shinypanel | 0.1.5 |
| shinyscreenshot | 0.2.1 | shinythemes | 1.2.0 |
| shinytitle | 0.1.0 | shinytoastr | 2.2.0 |
| shinyTree | 0.3.1 | shinyvalidate | 0.1.3 |
| shinyWidgets | 0.9.0 | ShortRead | 1.66.0 |
| showtext | 0.9-7 | showtextdb | 3.0 |
| SIAMCAT | 2.12.0 | SICtools | 1.38.0 |
| SIFT.Hsapiens.dbSNP137 | 1.0.0 | SigCheck | 2.40.0 |
| sigclust | 1.1.0.1 | sigFeature | 1.26.0 |
| SigFuge | 1.46.0 | siggenes | 1.82.0 |
| sights | 1.34.0 | Signac | 1.15.0 |
| signal | 1.8-1 | signatureSearch | 1.22.0 |
| signeR | 2.10.0 | signifinder | 1.10.0 |
| SigsPack | 1.22.0 | sigsquared | 1.40.0 |
| SIM | 1.78.0 | SIMAT | 1.40.0 |
| SimBindProfiles | 1.40.0 | SimBu | 1.10.0 |
| SIMD | 1.26.0 | SimFFPE | 1.20.0 |
| similaRpeak | 1.40.0 | SIMLR | 1.34.0 |
| simona | 1.6.0 | simpIntLists | 1.44.0 |
| simpleCache | 0.4.2 | simpleSeg | 1.10.1 |
| simplifyEnrichment | 2.2.0 | sincell | 1.40.0 |
| single | 1.6.0 | SingleCellExperiment | 1.30.1 |
| SingleCellSignalR | 1.20.0 | singleCellTK | 2.18.1 |
| SingleMoleculeFootprinting | 2.2.0 | SingleR | 2.10.0 |
| singscore | 1.28.0 | SiPSiC | 1.8.0 |
| sitadela | 1.16.0 | sitePath | 1.24.0 |
| sitmo | 2.0.2 | sizepower | 1.78.0 |
| sjlabelled | 1.2.0 | sjmisc | 2.8.11 |
| skewr | 1.40.0 | skmeans | 0.2-18 |
| slalom | 1.30.0 | slam | 0.1-55 |
| slider | 0.3.2 | slingshot | 2.16.0 |
| SLqPCR | 1.74.0 | sm | 2.2-6.0 |
| SMAD | 1.24.0 | SMAP | 1.66.0 |
| SmartSVA | 0.1.3 | smatr | 3.4-8 |
| SMITE | 1.36.0 | smoother | 1.3 |
| smoothie | 1.0-4 | SmoothWin | 3.0.0 |
| smurf | 1.1.7 | SMVar | 1.3.4 |
| sn | 2.1.1 | sna | 2.8 |
| SNAGEE | 1.48.0 | SNAGEEdata | 1.44.0 |
| snakecase | 0.11.1 | snapCGH | 1.72.0 |
| snapcount | 1.20.0 | snifter | 1.18.1 |
| snm | 1.56.0 | snow | 0.4-4 |
| SnowballC | 0.7.1 | snowfall | 1.84-6.3 |
| SNPediaR | 1.34.0 | SNPhood | 1.38.0 |
| SNPlocs.Hsapiens.dbSNP144.GRCh37 | 0.99.20 | SNPRelate | 1.42.0 |
| snpStats | 1.58.0 | softImpute | 1.4-3 |
| soGGi | 1.40.1 | som | 0.3-5.2 |
| SomaticSignatures | 2.44.0 | SOMNiBUS | 1.16.0 |
| sonicLength | 1.4.7 | sortable | 0.5.0 |
| SoupX | 1.6.2 | sourcetools | 0.1.7-1 |
| sp | 2.2-0 | SpacePAC | 1.40.0 |
| spacetime | 1.3-3 | spacexr | 1.0.0 |
| spam | 2.11-1 | Spaniel | 1.22.0 |
| sparcl | 1.0.4 | sparklyr | 1.9.1 |
| sparrow | 1.14.0 | SparseArray | 1.8.1 |
| SparseM | 1.84-2 | sparseMatrixStats | 1.20.0 |
| sparseMVN | 0.2.2 | sparsenetgls | 1.26.0 |
| sparsepca | 0.1.2 | SparseSignatures | 2.18.0 |
| sparsesvd | 0.2-3 | sparsevctrs | 0.3.4 |
| spaSim | 1.10.0 | SpatialCPie | 1.24.0 |
| spatialDE | 1.14.1 | SpatialDecon | 1.18.0 |
| SpatialExperiment | 1.18.1 | SpatialExtremes | 2.1-0 |
| SpatialFeatureExperiment | 1.10.1 | spatialHeatmap | 2.14.1 |
| SpatialOmicsOverlay | 1.8.0 | spatialreg | 1.3-6 |
| SpatialTools | 1.0.5 | spatstat | 3.4-0 |
| spatstat.data | 3.1-8 | spatstat.explore | 3.5-2 |
| spatstat.geom | 3.5-0 | spatstat.linnet | 3.3-1 |
| spatstat.model | 3.4-0 | spatstat.random | 3.4-1 |
| spatstat.sparse | 3.1-0 | spatstat.univar | 3.1-4 |
| spatstat.utils | 3.1-5 | spatzie | 1.14.0 |
| spBayes | 0.4-8 | spData | 2.3.4 |
| spdep | 1.3-13 | spdl | 0.0.5 |
| speaq | 2.7.0 | speckle | 1.8.0 |
| specL | 1.42.0 | SpeCond | 1.62.0 |
| Spectra | 1.18.2 | SpectralTAD | 1.24.0 |
| speedglm | 0.3-5 | SPEM | 1.48.0 |
| SPIA | 2.60.0 | SPIAT | 1.10.0 |
| spicyR | 1.20.2 | SpidermiR | 1.32.0 |
| spikeLI | 2.68.0 | spiky | 1.14.0 |
| spkTools | 1.64.0 | splancs | 2.01-45 |
| splatter | 1.32.0 | SpliceWiz | 1.10.1 |
| SplicingFactory | 1.16.0 | SplicingGraphs | 1.48.0 |
| splineTimeR | 1.36.0 | SPLINTER | 1.34.0 |
| splitstackshape | 1.4.8 | splots | 1.74.0 |
| splus2R | 1.3-5 | SpotClean | 1.10.0 |
| SPOTlight | 1.12.1 | spqn | 1.20.0 |
| spsComps | 0.3.4.0 | SPsimSeq | 1.18.0 |
| spsUtil | 0.2.2 | SQLDataFrame | 1.22.0 |
| sqldf | 0.4-11 | SQUADD | 1.52.0 |
| SQUAREM | 2021.1 | squash | 1.0.9 |
| sRACIPE | 2.0.1 | SRAdb | 1.70.0 |
| srnadiff | 1.28.0 | ssc | 2.1-0 |
| sscu | 2.38.0 | sSeq | 1.46.0 |
| ssize | 1.82.0 | sSNAPPY | 1.12.0 |
| ssPATHS | 1.22.0 | ssrch | 1.24.0 |
| ssviz | 1.42.0 | stable | 1.1.6 |
| stabledist | 0.7-2 | stabs | 0.6-4 |
| stageR | 1.30.1 | standR | 1.12.0 |
| StanHeaders | 2.32.10 | staRank | 1.44.0 |
| StarBioTrek | 1.28.0 | stars | 0.6-8 |
| startupmsg | 1.0.0 | statebins | 1.4.0 |
| STATegRa | 1.44.0 | Statial | 1.10.0 |
| statip | 0.2.3 | statmod | 1.5.0 |
| statnet.common | 4.12.0 | statTarget | 1.38.0 |
| STdeconvolve | 1.6.0 | stemHypoxia | 1.44.0 |
| stepNorm | 1.80.0 | stJoincount | 1.10.0 |
| stopwords | 2.3 | storr | 1.2.6 |
| strandCheckR | 1.26.0 | strawr | 0.0.92 |
| Streamer | 1.54.0 | strex | 2.0.1 |
| STRINGdb | 2.20.0 | stringdist | 0.9.15 |
| stringfish | 0.17.0 | stringi | 1.8.7 |
| stringr | 1.5.1 | strucchange | 1.5-4 |
| struct | 1.20.2 | Structstrings | 1.24.0 |
| structToolbox | 1.20.0 | StructuralVariantAnnotation | 1.24.0 |
| styler | 1.10.3 | SubCellBarCode | 1.24.0 |
| subSeq | 1.38.0 | SUITOR | 1.10.0 |
| SummarizedBenchmark | 2.20.0 | SummarizedExperiment | 1.38.1 |
| summarytools | 1.1.4 | Summix | 2.14.0 |
| superheat | 0.1.0 | SuperLearner | 2.0-29 |
| supersigs | 1.16.0 | SuppDists | 1.1-9.9 |
| supraHex | 1.40.0 | surfaltr | 1.14.0 |
| survcomp | 1.58.0 | survey | 4.4-2 |
| survivalAnalysis | 0.4.0 | survivalROC | 1.0.3.1 |
| survivalsvm | 0.0.6 | survminer | 0.5.0 |
| survMisc | 0.5.6 | survtype | 1.24.0 |
| sva | 3.56.0 | svaNUMT | 1.14.0 |
| svaRetro | 1.14.0 | svd | 0.5.8 |
| svglite | 2.2.1 | svgPanZoom | 0.3.4 |
| SVMDO | 1.8.0 | svMisc | 1.4.3 |
| svUnit | 1.0.8 | swamp | 1.5.1 |
| SWATH2stats | 1.38.0 | SwathXtend | 2.30.0 |
| swfdr | 1.34.0 | switchBox | 1.44.0 |
| switchde | 1.34.0 | sylly | 0.1-6 |
| sylly.en | 0.1-3 | synapsis | 1.14.0 |
| synapter | 2.31.0 | synergyfinder | 3.16.0 |
| SynExtend | 1.20.2 | synlet | 2.8.0 |
| SynMut | 1.24.0 | syntenet | 1.10.2 |
| sys | 3.4.3 | sysfonts | 0.8.9 |
| systemfonts | 1.2.3 | systemPipeR | 2.14.2 |
| systemPipeShiny | 1.18.0 | systemPipeTools | 1.16.0 |
| syuzhet | 1.0.7 | tadar | 1.6.0 |
| TADCompare | 1.18.0 | tagcloud | 0.7.0 |
| tanggle | 1.14.0 | TAPseq | 1.20.0 |
| target | 1.22.0 | TargetDecoy | 1.14.0 |
| TargetScore | 1.46.0 | TargetSearch | 2.10.0 |
| TBSignatureProfiler | 1.20.0 | TBX20BamSubset | 1.44.0 |
| TCA | 1.2.1 | TCC | 1.48.0 |
| TCGAbiolinks | 2.36.0 | TCGAbiolinksGUI.data | 1.28.0 |
| TCGAutils | 1.28.0 | tcltk2 | 1.6.1 |
| TCseq | 1.32.0 | TDbasedUFE | 1.8.0 |
| TDbasedUFEadv | 1.8.1 | TeachingDemos | 2.13 |
| TEKRABber | 1.12.0 | tensor | 1.5.1 |
| tensorA | 0.36.2.1 | tensorflow | 2.20.0 |
| TENxIO | 1.10.2 | TENxPBMCData | 1.26.0 |
| tenXplore | 1.30.0 | TEQC | 4.30.0 |
| ternarynet | 1.52.0 | terra | 1.8-60 |
| terraTCGAdata | 1.12.0 | tester | 0.2.0 |
| testthat | 3.2.3 | text2vec | 0.6.4 |
| textclean | 0.9.3 | textshape | 1.7.5 |
| textshaping | 1.0.1 | textstem | 0.1.4 |
| TFARM | 1.30.0 | tfautograph | 0.3.2 |
| TFBSTools | 1.46.0 | TFEA.ChIP | 1.28.0 |
| TFHAZ | 1.30.0 | TFisher | 0.2.0 |
| TFMPvalue | 0.0.9 | tfprobability | 0.15.2 |
| tfruns | 1.5.4 | TFutils | 1.28.0 |
| TH.data | 1.1-3 | threejs | 0.3.4 |
| tibble | 3.3.0 | tictoc | 1.2.1 |
| tidybayes | 3.0.7 | tidybulk | 1.20.0 |
| tidydr | 0.0.6 | tidygraph | 1.3.1 |
| tidyHeatmap | 1.12.2 | tidyr | 1.3.1 |
| tidyselect | 1.2.1 | tidySingleCellExperiment | 1.18.1 |
| tidySummarizedExperiment | 1.18.1 | tidytext | 0.4.3 |
| tidytidbits | 0.3.3 | tidytree | 0.4.6 |
| tidyverse | 2.0.0 | tiff | 0.1-12 |
| tigre | 1.62.0 | tiledb | 0.32.0 |
| TileDBArray | 1.18.0 | tilingArray | 1.86.0 |
| timechange | 0.3.0 | timecourse | 1.80.0 |
| timeDate | 4041.110 | timeOmics | 1.20.0 |
| timescape | 1.32.0 | timeSeries | 4041.111 |
| TimiRGeN | 1.11.0 | timsac | 1.3.8-4 |
| TIN | 1.40.0 | tinytex | 0.57 |
| tippy | 0.1.0 | TissueEnrich | 1.28.0 |
| TitanCNA | 1.45.0 | tkrplot | 0.0-30 |
| tkWidgets | 1.86.0 | tLOH | 1.16.0 |
| tm | 0.7-16 | TMB | 1.9.17 |
| TMixClust | 1.30.0 | tmvtnorm | 1.6 |
| TNBC.CMS | 1.18.0 | TnT | 1.30.0 |
| TOAST | 1.22.0 | toastui | 0.4.0 |
| tokenizers | 0.3.0 | tomoda | 1.18.0 |
| tomoseqr | 1.12.0 | TOP | 1.8.0 |
| topconfects | 1.24.0 | topdownr | 1.30.0 |
| topGO | 2.60.1 | topicmodels | 0.2-17 |
| torch | 0.16.0 | ToxicoGx | 2.12.0 |
| TPP | 3.36.0 | TPP2D | 1.24.0 |
| tracktables | 1.42.0 | trackViewer | 1.44.0 |
| tractor.base | 3.4.2 | tradeSeq | 1.22.0 |
| TrajectoryGeometry | 1.16.0 | TrajectoryUtils | 1.16.1 |
| transcriptogramer | 1.30.0 | transcriptR | 1.36.0 |
| transformGamPoi | 1.14.0 | transformr | 0.1.5 |
| transite | 1.26.0 | tRanslatome | 1.46.0 |
| transomics2cytoscape | 1.18.0 | transport | 0.15-4 |
| TransView | 1.46.0 | traseR | 1.38.0 |
| traviz | 1.8.0 | TreeAndLeaf | 1.20.0 |
| treeio | 1.32.0 | treekoR | 1.16.0 |
| treemap | 2.4-4 | TreeSummarizedExperiment | 2.16.1 |
| TREG | 1.12.0 | Trendy | 1.30.0 |
| TRESS | 1.14.0 | tricycle | 1.16.0 |
| triebeard | 0.4.1 | trigger | 1.52.0 |
| trio | 3.46.0 | triplex | 1.48.0 |
| tripr | 1.14.0 | tRNA | 1.26.0 |
| tRNAdbImport | 1.26.0 | tRNAscanImport | 1.28.0 |
| TRONCO | 2.40.0 | truncdist | 1.0-2 |
| truncnorm | 1.0-9 | trust | 0.1-8 |
| TSCAN | 1.46.0 | tseries | 0.10-58 |
| tsne | 0.1-3.1 | TSP | 1.2-5 |
| ttgsea | 1.16.0 | TTMap | 1.30.0 |
| TTR | 0.24.4 | ttservice | 0.5.3 |
| TurboNorm | 1.56.0 | TVTB | 1.34.1 |
| tweeDEseq | 1.54.0 | tweedie | 2.3.5 |
| tweenr | 2.0.3 | twilight | 1.84.0 |
| twoddpcr | 1.32.0 | txcutr | 1.14.0 |
| TxDb.Celegans.UCSC.ce6.ensGene | 3.2.2 | TxDb.Dmelanogaster.UCSC.dm3.ensGene | 3.2.2 |
| TxDb.Dmelanogaster.UCSC.dm6.ensGene | 3.12.0 | TxDb.Hsapiens.UCSC.hg18.knownGene | 3.2.2 |
| TxDb.Hsapiens.UCSC.hg19.knownGene | 3.2.2 | TxDb.Hsapiens.UCSC.hg38.knownGene | 3.21.0 |
| TxDb.Mmusculus.UCSC.mm10.knownGene | 3.10.0 | TxDb.Mmusculus.UCSC.mm9.knownGene | 3.2.2 |
| TxDb.Rnorvegicus.UCSC.rn4.ensGene | 3.2.2 | txdbmaker | 1.4.2 |
| tximeta | 1.26.1 | tximport | 1.36.1 |
| tximportData | 1.36.0 | TypeInfo | 1.68.0 |
| tzdb | 0.5.0 | UCell | 2.12.0 |
| ucminf | 1.2.2 | UCSC.utils | 1.4.0 |
| Ularcirc | 1.26.0 | umap | 0.2.10.0 |
| UMI4Cats | 1.18.1 | uncoverappLib | 1.18.0 |
| UNDO | 1.50.0 | unifiedWMWqPCR | 1.44.0 |
| UniProt.ws | 2.48.0 | uniqtag | 1.0.1 |
| Uniquorn | 2.28.0 | units | 0.8-7 |
| universalmotif | 1.26.2 | unmarked | 1.5.0 |
| updateObject | 1.12.0 | UpSetR | 1.4.0 |
| urca | 1.3-4 | urlchecker | 1.0.1 |
| urltools | 1.7.3.1 | usethis | 3.1.0 |
| uSORT | 1.34.0 | utf8 | 1.2.6 |
| uuid | 1.2-1 | uwot | 0.2.3 |
| V8 | 6.0.6 | VAExprs | 1.14.0 |
| valr | 0.8.4 | VAM | 1.1.0 |
| VanillaICE | 1.70.1 | VarCon | 1.16.0 |
| VarfromPDB | 2.2.10 | varhandle | 2.0.6 |
| variancePartition | 1.38.1 | VariantAnnotation | 1.54.1 |
| VariantExperiment | 1.22.0 | VariantFiltering | 1.44.0 |
| VariantTools | 1.50.0 | varSelRF | 0.7-8 |
| VaSP | 1.20.0 | vbmp | 1.76.0 |
| vcd | 1.4-13 | VCFArray | 1.24.0 |
| vcfR | 1.15.0 | vctrs | 0.6.5 |
| VDJdive | 1.10.0 | VegaMC | 3.46.0 |
| vegan | 2.7-1 | velociraptor | 1.18.0 |
| veloviz | 1.14.0 | venn | 1.12 |
| VennDetail | 1.23.0 | VennDiagram | 1.7.3 |
| verification | 1.45 | VERSO | 1.18.0 |
| VGAM | 1.1-13 | vidger | 1.28.0 |
| VIM | 6.2.2 | vioplot | 0.5.1 |
| viper | 1.42.0 | vipor | 0.4.7 |
| viridis | 0.6.5 | viridisLite | 0.4.2 |
| visdat | 0.6.0 | ViSEAGO | 1.22.0 |
| visNetwork | 2.1.2 | vissE | 1.16.0 |
| Voyager | 1.10.0 | VplotR | 1.18.0 |
| vroom | 1.6.5 | vsclust | 1.10.0 |
| vsn | 3.76.0 | vtpnet | 0.48.0 |
| vulcan | 1.30.0 | waddR | 1.22.0 |
| waffle | 1.0.2 | waiter | 0.2.5 |
| waldo | 0.6.2 | warp | 0.2.1 |
| wateRmelon | 2.14.0 | wavClusteR | 2.42.0 |
| waveslim | 1.8.5 | wavethresh | 4.7.3 |
| wdm | 0.2.6 | weaver | 1.74.0 |
| webbioc | 1.80.0 | webchem | 1.3.1 |
| webshot | 0.5.5 | webutils | 1.2.2 |
| weitrix | 1.20.0 | wesanderson | 0.3.7 |
| WGCNA | 1.73 | wheatmap | 0.2.0 |
| whisker | 0.4.1 | widgetTools | 1.86.0 |
| wiggleplotr | 1.32.0 | withr | 3.0.2 |
| wk | 0.9.4 | word2vec | 0.4.0 |
| wordcloud | 2.6 | wordcloud2 | 0.2.1 |
| wpm | 1.18.0 | wppi | 1.16.0 |
| Wrench | 1.26.0 | writexl | 1.5.4 |
| WriteXLS | 6.8.0 | wrswoR | 1.1.1 |
| xcms | 4.6.3 | xcore | 1.12.0 |
| XDE | 2.54.0 | Xeva | 1.24.0 |
| xfun | 0.53 | xgboost | 1.7.11.1 |
| XINA | 1.26.0 | xmapbridge | 1.66.0 |
| XML | 3.99-0.19 | xml2 | 1.4.0 |
| XML2R | 0.0.9 | xmlparsedata | 1.0.5 |
| XNAString | 1.15.0 | xopen | 1.0.1 |
| xtable | 1.8-4 | XtraSNPlocs.Hsapiens.dbSNP144.GRCh37 | 0.99.12 |
| xts | 0.14.1 | XVector | 0.48.0 |
| yaImpute | 1.0-34.1 | yaml | 2.3.10 |
| yamss | 1.34.1 | YAPSA | 1.34.0 |
| yardstick | 1.3.2 | yarn | 1.34.0 |
| yeastCC | 1.48.0 | yeastExpData | 0.54.0 |
| yesno | 0.1.3 | yulab.utils | 0.2.1 |
| zCompositions | 1.5.0-5 | zeallot | 0.2.0 |
| zellkonverter | 1.18.0 | zenith | 1.10.0 |
| zFPKM | 1.30.0 | zigg | 0.0.2 |
| zinbwave | 1.30.0 | zip | 2.3.3 |
| zlibbioc | 1.54.0 | zoo | 1.8-14 |
| ZygosityPredictor | 1.8.0 |